From: Warren D. <wa...@de...> - 2006-03-21 21:05:45
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Terry, The trick is to render large and then reduce. With recent versions, you can do something like this # To get a 300 dpi PNG file for a 4 inch by 3 inch image... # Ray-traced: ray 1200,900 png hires_ray.pdb, dpi=3D300 # OpenGL: draw 1200,900 png hires_ogl.pdb, dpi=3D300 Cheers, Warren -- Warren L. DeLano, Ph.D. =20 Principal Scientist . DeLano Scientific LLC =20 . 400 Oyster Point Blvd., Suite 213 =20 . South San Francisco, CA 94080 USA =20 . Biz:(650)-872-0942 Tech:(650)-872-0834 =20 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:wa...@de... =20 =20 > -----Original Message----- > From: pym...@li...=20 > [mailto:pym...@li...] On Behalf Of=20 > Terry Jones > Sent: Tuesday, March 21, 2006 12:43 PM > To: pym...@li... > Subject: [PyMOL] Producing publication quality images >=20 > Hi. I'm wondering if there's a way to make pymol produce=20 > high-quality images suitable for publication. >=20 > I've used ray/png to produce images, but the person I pass=20 > them on to tells me they're only 50 to 100 dpi, and they're=20 > wanting 300 dpi if possible. >=20 > Is there a way to do this in pymol? Or can I export image=20 > data and use some other tools to get to a 300dpi image? >=20 > BTW, I'll try to make sure that pymol gets credited in the paper. >=20 > Thanks, > Terry >=20 >=20 > ------------------------------------------------------- > This SF.Net email is sponsored by xPML, a groundbreaking=20 > scripting language that extends applications into web and=20 > mobile media. Attend the live webcast and join the prime=20 > developer group breaking into this new coding territory! > http://sel.as-us.falkag.net/sel?cmd=3Dlnk&kid=3D110944&bid=3D241720& > dat=3D121642 > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users >=20 >=20 >=20 >=20 |
From: Mark A S. <sa...@um...> - 2006-03-22 04:51:20
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You can easily change the resolution (dpi) of an image without changing the number of pixels, by editing the file in Photoshop (in Image Size, change resolution without rescaling) or in GraphicConverter (on Mac). _________________________________ Mark A. Saper, Ph.D. Associate Professor of Biological Chemistry Biophysics Research Division, University of Michigan 930 N University Ave Ann Arbor MI 48109-1055 U.S.A. sa...@um... (734) 764-3353 fax (734) 764-3323 http://www.biochem.med.umich.edu/biochem/research/profiles/saper.html |
From: Joao R. C. M. <jrc...@if...> - 2006-03-22 14:06:17
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Or using Gimp (on Linux and window$). Cheers Joao Renato. Mark A Saper wrote: > You can easily change the resolution (dpi) of an image without > changing the number of pixels, by editing the file in Photoshop (in > Image Size, change resolution without rescaling) or in > GraphicConverter (on Mac). > _________________________________ > |
From: Praedor A. <pr...@ya...> - 2006-04-06 12:16:47
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On Wednesday 22 March 2006 09:05 am, Joao Renato Carvalho Muniz wrote: > Or using Gimp (on Linux and window$). > Mark A Saper wrote: > > You can easily change the resolution (dpi) of an image without > > changing the number of pixels, by editing the file in Photoshop (in > > Image Size, change resolution without rescaling) or in > > GraphicConverter (on Mac). I use gimp on linux. I simply raytrace the image I want to use at a=20 resolution above what I will be aiming for in publication, render it, then= =20 scale the image down to the appropriate size for submission. Never ever=20 scale up. praedor =2D-=20 The Reichstag fire is to Hitler as 9/11 is to Bush |
From: Terry J. <tc...@ca...> - 2006-03-21 21:14:12
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Thanks Warren, I'll try that. I got two other replies, neither mentioning the 300dpi arg to png. If that isn't recognized, I'll upgrade. Terry |
From: Michael G. L. <ml...@um...> - 2006-03-21 21:58:44
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It's not pretty, and this is easy enough to do by hand, but I've had enough people ask me about this that I hacked up a little rendering plugin just now. Can someone grab it from http://www-personal.umich.edu/~mlerner/PyMOL/rendering.py put it in $PYMOL_PATH/modules/pmg_tk/startup/ (or whatever it is you do on your OS of choice) and tell me what you think? -michael -- www.umich.edu/~mlerner | _ |Michael Lerner This isn't a democracy;| ASCII ribbon campaign ( ) | Michigan it's a cheer-ocracy. | - against HTML email X | Biophysics -Torrence, Bring It On| / \ | mlerner@umich On Tue, 21 Mar 2006, Warren DeLano wrote: > Terry, > > The trick is to render large and then reduce. With recent versions, you > can do something like this > > # To get a 300 dpi PNG file for a 4 inch by 3 inch image... > > # Ray-traced: > > ray 1200,900 > png hires_ray.pdb, dpi=300 > > # OpenGL: > > draw 1200,900 > png hires_ogl.pdb, dpi=300 > > Cheers, > Warren > > -- > Warren L. DeLano, Ph.D. > Principal Scientist > > . DeLano Scientific LLC > . 400 Oyster Point Blvd., Suite 213 > . South San Francisco, CA 94080 USA > . Biz:(650)-872-0942 Tech:(650)-872-0834 > . Fax:(650)-872-0273 Cell:(650)-346-1154 > . mailto:wa...@de... > > >> -----Original Message----- >> From: pym...@li... >> [mailto:pym...@li...] On Behalf Of >> Terry Jones >> Sent: Tuesday, March 21, 2006 12:43 PM >> To: pym...@li... >> Subject: [PyMOL] Producing publication quality images >> >> Hi. I'm wondering if there's a way to make pymol produce >> high-quality images suitable for publication. >> >> I've used ray/png to produce images, but the person I pass >> them on to tells me they're only 50 to 100 dpi, and they're >> wanting 300 dpi if possible. >> >> Is there a way to do this in pymol? Or can I export image >> data and use some other tools to get to a 300dpi image? >> >> BTW, I'll try to make sure that pymol gets credited in the paper. >> >> Thanks, >> Terry >> >> >> ------------------------------------------------------- >> This SF.Net email is sponsored by xPML, a groundbreaking >> scripting language that extends applications into web and >> mobile media. Attend the live webcast and join the prime >> developer group breaking into this new coding territory! >> http://sel.as-us.falkag.net/sel?cmd=lnk&kid=110944&bid=241720& >> dat=121642 >> _______________________________________________ >> PyMOL-users mailing list >> PyM...@li... >> https://lists.sourceforge.net/lists/listinfo/pymol-users >> >> >> >> > > > ------------------------------------------------------- > This SF.Net email is sponsored by xPML, a groundbreaking scripting language > that extends applications into web and mobile media. Attend the live webcast > and join the prime developer group breaking into this new coding territory! > http://sel.as-us.falkag.net/sel?cmd=lnk&kid=110944&bid=241720&dat=121642 > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > |