From: Buz Barstow <buzb@ma...> - 2009-08-17 16:35:12
Thanks to everyone who replied to my query about extracting an amino
acid sequence from a PDB file!
Here is a summary of responses of my query;
1. Use SwissPDBViewer
2. Use Pymol 1.2
# or by selection
save 1hpv_A.fasta, chain A
3. With Phenix, you can use the "phenix.print_sequence" tool to output
the sequence in FASTA format.
4. If the PDB file is in the PDB, you can download the primary
sequence from here.
5. Use MOLEMAN2
6. Use PDBSET (part of CCP4)
All the best,
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