From: Hilgers, M. <Mar...@sy...> - 2003-02-21 19:56:04
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I've installed PyMol 0.86 on multiple macs according to the instructions = of Yuiwho/Bill Scott. It works beautifully except that identical ray tracings now take at least = 10 times as long relative to the previous version, or to 0.86 on my PC (system specifics below). = 1-2 minutes was a reasonable wait, but 30-40 minutes is just too long. There was mention on this mail = list of Povray dependency=20 failures, but at least as far as I can tell, nothing like this was an = issue during installation.=20 Has this been a problem for anyone else?=20 Thanks, Mark Slow: Pymol 0.86 on 12" PowerBook G4 (867 MHz/640 MB RAM), OS 10.2.4 Pymol 0.86 on 15" PowerBook G3 (400 MHz/256 MB RAM), OS 10.2.3 Fast: Pymol 0.84 on 15" PowerBook G3 (400 MHz/256 MB RAM), OS 10.2.3 Pymol 0.86 on Dell PC (600 MHz/256 MB RAM), Windows 2000 Pymol 0.82 on 15" PowerBook G3 (400 MHz/256 MB RAM), OS 10.2.3 ************************************ Mark Hilgers, Ph.D. Syrrx, Inc. 10410 Science Center Drive San Diego, CA 92121 Phone: (858) 731-3570 Mobile: (858) 442-0754 Fax: (858) 550-0526 E-mail: mar...@sy... ************************************ =20 =20 =20 ----------=20 This message contains confidential information and is intended only for = the individual named. If you are not the named addressee you should not = disseminate, distribute or copy this e-mail. Please notify the sender = immediately by e-mail if you have received this e-mail by mistake and = delete this e-mail from your system. E-mail transmission cannot be = guaranteed to be secure or error-free as information could be = intercepted, corrupted, lost, destroyed, arrive late or incomplete, or = contain viruses. The sender therefore does not accept liability for any = errors or omissions in the contents of this message, which arise as a = result of e-mail transmission. If verification is required please = request a hard-copy version.=20 =20 |
From: Matt S. <mat...@ma...> - 2003-02-22 06:14:33
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Povray was recently removed as dependency from the pymol package as it isn't really required to build and run pymol, so you probably don't have it installed, run 'fink install povray' and see if that helps. Matt On Saturday, Feb 22, 2003, at 06:56 Australia/Sydney, Hilgers, Mark wrote: > > I've installed PyMol 0.86 on multiple macs according to the > instructions of Yuiwho/Bill Scott. It > works beautifully except that identical ray tracings now take at least > 10 times as long relative > to the previous version, or to 0.86 on my PC (system specifics below). > 1-2 minutes was a reasonable > wait, but 30-40 minutes is just too long. There was mention on this > mail list of Povray dependency > failures, but at least as far as I can tell, nothing like this was an > issue during installation. > > Has this been a problem for anyone else? > > Thanks, > Mark > > > Slow: > Pymol 0.86 on 12" PowerBook G4 (867 MHz/640 MB RAM), OS 10.2.4 > Pymol 0.86 on 15" PowerBook G3 (400 MHz/256 MB RAM), OS 10.2.3 > > Fast: > Pymol 0.84 on 15" PowerBook G3 (400 MHz/256 MB RAM), OS 10.2.3 > Pymol 0.86 on Dell PC (600 MHz/256 MB RAM), Windows 2000 > Pymol 0.82 on 15" PowerBook G3 (400 MHz/256 MB RAM), OS 10.2.3 > > > > > > ************************************ > Mark Hilgers, Ph.D. > Syrrx, Inc. > 10410 Science Center Drive > San Diego, CA 92121 > > Phone: (858) 731-3570 > Mobile: (858) 442-0754 > Fax: (858) 550-0526 > E-mail: mar...@sy... > ************************************ > > > > > ---------- > This message contains confidential information and is intended only > for the individual named. If you are not the named addressee you > should not disseminate, distribute or copy this e-mail. Please notify > the sender immediately by e-mail if you have received this e-mail by > mistake and delete this e-mail from your system. E-mail transmission > cannot be guaranteed to be secure or error-free as information could > be intercepted, corrupted, lost, destroyed, arrive late or incomplete, > or contain viruses. The sender therefore does not accept liability for > any errors or omissions in the contents of this message, which arise > as a result of e-mail transmission. If verification is required please > request a hard-copy version. > > > > ------------------------------------------------------- > This SF.net email is sponsored by: SlickEdit Inc. Develop an edge. > The most comprehensive and flexible code editor you can use. > Code faster. C/C++, C#, Java, HTML, XML, many more. FREE 30-Day Trial. > www.slickedit.com/sourceforge > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users > |
From: Warren L. D. <wa...@su...> - 2003-03-04 15:52:16
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PyMOL Users, We have a user reporting problems with picking atoms using PyMOL 0.86 under linux with the Xig drivers, with both the Oxygen GVX1 and the Radeon 7500. Has anyone else come across similar problems with any other configurations? Have solutions been found? Do people have Xig-based systems running in which they can pick atoms? PyMOL uses chroma-keying for atom picking, and is thus susceptable to driver or hardware-level glitches in color rasterizatin or pixel-to-memory copies (for example, the Radeon 8500 was broken in this respect and required a special work-around). I don't yet have a test machine set up with Xig, so I can't currently follow this up... Thanks, Warren |