From: DeLano, W. <wa...@su...> - 2002-09-20 22:26:34
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Scott, isomesh msh1, map1, 1.5, myobject, carve=3D2.1 The postfix "carve=3D2.1" will trim density which is more than 2.1 A = from myobject. =20 You may want to play around with the exact cutoff... Cheers, Warren > -----Original Message----- > From: Scott Classen [mailto:cl...@uc...] > Sent: Friday, September 20, 2002 3:11 PM > To: pym...@li... > Subject: [PyMOL] electron density maps >=20 >=20 > Hello fellow PyMOL users, > I am trying to display a ccp4 map over just a ligand. I have=20 > successfully read in the map and displayed it around the ligand with: >=20 > isomesh msh1, map1, 1.5, myobject >=20 > but the map has bits and peices of the surrounding sidechains. > Is there a way to only display the map around my ligand? > Thanks, > Scott >=20 >=20 >=20 > = =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D > Scott Classen > cl...@uc... > University of California, Berkeley > Department of Molecular & Cell Biology > 229 Stanley Hall #3206 > Berkeley, CA 94720-3206 > LAB 510.643.9491 > FAX 510.643.9290 > = =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D >=20 >=20 >=20 > ------------------------------------------------------- > This sf.net email is sponsored by:ThinkGeek > Welcome to geek heaven. > http://thinkgeek.com/sf > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users >=20 |