> From: Mirek Cygler [mailto:mirek.cygler@...]
> I wonder if there is a command equivalent to "turn" in=20
> molscript? I would
> like to show a cartoon view of my molecule with some=20
> sidechains. When I use
> "show cartoon" and include a selection of sidechains, they=20
> appear far from
> the backbone worm.
Turn off "smooth loops" and "flat sheets" using the cartoon menu or the
> Can I change the name of the object after loading the=20
> molecule into PyMol?
No, but you can create an identical copy and delete the original.
> When I save the molecule can I also save the secondary=20
> structure assignments
> with it?=20
I wish...this is on the "to do" list.
> Is there a facility within PyMol to detect secondary=20
Sort of. util.ss make an attempt at it, but the algorithm in
unvalidated (something I just cooked up one morning). For publication,
I encourage users to obtain secondary structure assignment via an
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