From: Jules J. <jo...@he...> - 2004-11-23 11:29:15
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Oops! sorry, I just realized that the .pse was quite large. My apologies. The pdbs used were 1hju, 1hjs and 1hjq. The following script will produce the same pse: select Binding, (resi 86,300) label Binding and elem o, (resn+'-'+resi) zoom Binding Jules -------- Original Message -------- Subject: 0.98 beta 18 Selecting Date: Tue, 23 Nov 2004 11:05:01 +0000 From: Jules Jacobsen <jo...@he...> To: pym...@li... Hi all, Has anyone else had the problem of not being able to select several identical residue types in aligned structures? eg in the .pse included, if you single left-click on Trp-86 (the left one of the 'Binding' selection) and try to select them all in the same manner, PyMOL won't add any more residues to the selection if it has the same resn/resi. It will select them if you use a shift-left-click. It will however, happily remove them from the selection with a single left-click. I'm guessing this is a PyMOL rather than platform specific bug? (I'm running on WinXP) Cheers, Jules |
From: Warren D. <wa...@de...> - 2004-12-07 20:04:01
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Jules, Good call on this bug -- I'd mistakenly used "in" instead of "and" inside the selection toggle logic. This will be fixed in future releases. In the meantime, you can work around this bug by using the +Box (shift-left-click-and-drag) action or the sequence viewer to add matching residues into a selection using the mouse. Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:wa...@de... > -----Original Message----- > From: pym...@li... > [mailto:pym...@li...] On Behalf Of > Jules Jacobsen > Sent: Tuesday, November 23, 2004 3:27 AM > To: pym...@li... > Subject: [PyMOL] 0.98 beta 18 Selecting bug > > Oops! sorry, I just realized that the .pse was quite large. > My apologies. > > The pdbs used were 1hju, 1hjs and 1hjq. The following script will > produce the same pse: > > select Binding, (resi 86,300) > label Binding and elem o, (resn+'-'+resi) > zoom Binding > > > Jules > > -------- Original Message -------- > Subject: 0.98 beta 18 Selecting > Date: Tue, 23 Nov 2004 11:05:01 +0000 > From: Jules Jacobsen <jo...@he...> > To: pym...@li... > > Hi all, > > Has anyone else had the problem of not being able to select several > identical residue types in aligned structures? eg in the .pse > included, > if you single left-click on Trp-86 (the left one of the 'Binding' > selection) and try to select them all in the same manner, PyMOL won't > add any more residues to the selection if it has the same > resn/resi. It > will select them if you use a shift-left-click. It will > however, happily > remove them from the selection with a single left-click. > > I'm guessing this is a PyMOL rather than platform specific bug? (I'm > running on WinXP) > > Cheers, > > Jules > > > > > ------------------------------------------------------- > SF email is sponsored by - The IT Product Guide > Read honest & candid reviews on hundreds of IT Products from > real users. > Discover which products truly live up to the hype. Start reading now. > http://productguide.itmanagersjournal.com/ > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users > |