From: Osvaldo M. <alo...@gm...> - 2012-02-08 15:20:14
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Hi Troels, cmd.save("filename.fasta") will save the sequence of your PDB file in a file in fasta format. Then you could open the file and put the content in a list. cheers, Osvaldo ---------- Forwarded message ---------- > From: "Troels Emtekær Linnet" <tl...@gm...> > To: "pym...@li..." <PyM...@li... > > > Cc: > Date: Wed, 8 Feb 2012 15:24:37 +0100 > Subject: [PyMOL] One liner for getting amino acid sequence from pdb file > Hi. > > I have a pdb file, which is a modelled structure from another sequence. > > I want to check the amino acid sequence in the structure. > Does anyone know a one-liner in pymol which will extract the sequence > in one-letter code? > > best > Troels > > |