From: Suhaila H. M. H. <bel...@ho...> - 2012-03-04 17:58:59
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Hello guys. I have a problem installing Contact Map Visualizer plugin. It's supposed to be on the plugin menu once installed and restarting the PyMOL but it was always not there. Please help me how to fix this anyone? I need to use it a.s.a.p please. File "C:\Program Files\DeLano Scientific\PyMOL/modules\pmg_tk\PMGApp.py", line 156, in initialize_plugins __builtin__.__import__(mod_name) File "C:\Program Files\DeLano Scientific\PyMOL/modules\pmg_tk\startup\contact_map_visualizer.py", line 40, in ? import ImageImportError: No module named ImageError: unable to initialize plugin 'contact_map_visualizer'. Most sincerely,Suhaila |
From: Jason V. <jas...@sc...> - 2012-03-04 20:06:17
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Suhaila, The "image" python module is missing. It looks like you should switch to an open-source version of PyMOL and try to install the visualizer that way. Cheers, -- Jason On Sun, Mar 4, 2012 at 12:58 PM, Suhaila Haji Mohd Hussin <bel...@ho...> wrote: > Hello guys. > > I have a problem installing Contact Map Visualizer plugin. It's supposed to > be on the plugin menu once installed and restarting the PyMOL but it was > always not there. > > Please help me how to fix this anyone? I need to use it a.s.a.p please. > > File "C:\Program Files\DeLano Scientific\PyMOL/modules\pmg_tk\PMGApp.py", > line 156, in initialize_plugins > __builtin__.__import__(mod_name) > File "C:\Program Files\DeLano > Scientific\PyMOL/modules\pmg_tk\startup\contact_map_visualizer.py", line 40, > in ? > import Image > ImportError: No module named Image > Error: unable to initialize plugin 'contact_map_visualizer'. > > > Most sincerely, > Suhaila > > ------------------------------------------------------------------------------ > Virtualization & Cloud Management Using Capacity Planning > Cloud computing makes use of virtualization - but cloud computing > also focuses on allowing computing to be delivered as a service. > http://www.accelacomm.com/jaw/sfnl/114/51521223/ > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, LLC (e) Jas...@sc... (o) +1 (603) 374-7120 |
From: Troels E. L. <tl...@gm...> - 2012-03-04 20:28:54
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sudo apt-get install python-imaging Best Troels 2012/3/4 Jason Vertrees <jas...@sc...> > Suhaila, > > The "image" python module is missing. It looks like you should switch > to an open-source version of PyMOL and try to install the visualizer > that way. > > Cheers, > > -- Jason > > On Sun, Mar 4, 2012 at 12:58 PM, Suhaila Haji Mohd Hussin > <bel...@ho...> wrote: > > Hello guys. > > > > I have a problem installing Contact Map Visualizer plugin. It's supposed > to > > be on the plugin menu once installed and restarting the PyMOL but it was > > always not there. > > > > Please help me how to fix this anyone? I need to use it a.s.a.p please. > > > > File "C:\Program Files\DeLano > Scientific\PyMOL/modules\pmg_tk\PMGApp.py", > > line 156, in initialize_plugins > > __builtin__.__import__(mod_name) > > File "C:\Program Files\DeLano > > Scientific\PyMOL/modules\pmg_tk\startup\contact_map_visualizer.py", line > 40, > > in ? > > import Image > > ImportError: No module named Image > > Error: unable to initialize plugin 'contact_map_visualizer'. > > > > > > Most sincerely, > > Suhaila > > > > > ------------------------------------------------------------------------------ > > Virtualization & Cloud Management Using Capacity Planning > > Cloud computing makes use of virtualization - but cloud computing > > also focuses on allowing computing to be delivered as a service. > > http://www.accelacomm.com/jaw/sfnl/114/51521223/ > > _______________________________________________ > > PyMOL-users mailing list (PyM...@li...) > > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > > Archives: http://www.mail-archive.com/pym...@li... > > > > -- > Jason Vertrees, PhD > PyMOL Product Manager > Schrödinger, LLC > > (e) Jas...@sc... > (o) +1 (603) 374-7120 > > > ------------------------------------------------------------------------------ > Virtualization & Cloud Management Using Capacity Planning > Cloud computing makes use of virtualization - but cloud computing > also focuses on allowing computing to be delivered as a service. > http://www.accelacomm.com/jaw/sfnl/114/51521223/ > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... > |
From: Thomas H. <sp...@us...> - 2012-03-04 22:03:01
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Troels Emtekær Linnet wrote, On 03/04/12 21:28: > sudo apt-get install python-imaging genius, on a windows installation? :-/ -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen |
From: Thomas H. <sp...@us...> - 2012-03-05 08:34:17
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Suhaila Haji Mohd Hussin wrote, On 03/05/12 00:22: > So how do you do it on Windows then? > > But I already have PIL despite having that error import image is > missing. I don't get it. for which python do you have PIL? Your PyMOL installation uses it's own python executable (built into the PyMOL.exe program). The "easy" answer is: Incentive PyMOL builds from version >= 1.4 have PIL included. So if you own a license, you could just install the recent version (1.5). I guess you have PyMOL <= 1.2 What could also work: As far as I can see, the contact_map_visualizer uses PIL only to determine the size of the image, which does not depend on the C module which is part of PIL. So you could try to just copy the "PIL" directory and the "PIL.pth" file to the "site-packages" directory of your PyMOL installation. You'll find it by typing into PyMOL command line: import site, os print os.path.join(os.path.dirname(site.__file__), 'site-packages') Hope that helps. Cheers, Thomas -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen |