Luca Jovine wrote:
> 1) Is there any typed command one can use to color a selection by atom
> type (rather than manually doing so by using the internal GUI pop-up menus)?
The "util" module contains a number of functions that color the atoms
according to type, with different colors for the C atoms. For instance,
util.cbay three
in a .pml script will color object "three" by atom type, with the carbon
atoms in yellow ("color by atom yellow").
Other functions from ../modules/pymol/util.py are cbag, cbac, cbas,
cbap, cbak, cbaw and cbab (grey (carbon), cyan, salmon, purple, pink,
white (hydrogen) and slate).
--
Lieven Buts
Brussels Free University
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