From: Martin H. <ma...@bl...> - 2010-08-25 09:44:57
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Hi all Is there a way to have the command "as sticks" show sticks and only polar hydrogens? Right now it shows all hydrogens and it would be nice if I could set it to leave out non polar hydrogens. Thanks for any suggestions. Martin |
From: Thomas H. <sp...@us...> - 2010-08-25 11:33:09
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Hi Martin, to hide all carbon bound hydrogens, you can do it like this: as sticks hide sticks, (elem C extend 1) and (elem H) Cheers, Thomas On Wed, Aug 25, 2010 at 11:44 AM, Martin Hediger <ma...@bl...> wrote: > Hi all > Is there a way to have the command "as sticks" show sticks and only > polar hydrogens? Right now it shows all hydrogens and it would be nice > if I could set it to leave out non polar hydrogens. > > Thanks for any suggestions. > > Martin |
From: Andreini M. <man...@si...> - 2010-09-03 13:28:51
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Hi Martin, Both these commands should work fine: Show sticks on all but not on the hydrogens bound to carbon: show sticks, all &! (elem H & neighbor elem C) show sticks on all except hydrogens or on the hydrogens bound to Nitrogen or Oxygen: show sticks, !elem H | (elem H & neighbor elem N,O) the "neighbor" definition is very useful in atom selection ------------------------------------------------------------- Matteo Andreini Drug Design Siena Biotech S.p.A. Strada del Petriccio e Belriguardo, 35 53100 Siena - ITALY Tel :(+39) 0577 381 415 Fax :(+39) 0577 381 410 man...@si... http://www.sienabiotech.it/ -----Original Message----- From: Martin Hediger [mailto:ma...@bl...] Sent: Wednesday, August 25, 2010 11:45 AM To: pym...@li... Subject: [PyMOL] "as sticks" set up Hi all Is there a way to have the command "as sticks" show sticks and only polar hydrogens? Right now it shows all hydrogens and it would be nice if I could set it to leave out non polar hydrogens. Thanks for any suggestions. Martin ------------------------------------------------------------------------------ Sell apps to millions through the Intel(R) Atom(Tm) Developer Program Be part of this innovative community and reach millions of netbook users worldwide. Take advantage of special opportunities to increase revenue and speed time-to-market. Join now, and jumpstart your future. http://p.sf.net/sfu/intel-atom-d2d _______________________________________________ PyMOL-users mailing list (PyM...@li...) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pym...@li... ---------------------------------------------- This email and any files transmitted with it are confidential and intended solely for the use of the individual or entity to whom they are addressed. If you have received this email in error please notify the system manager. This message contains confidential information and is intended only for the individual named. If you are not the named addressee you should not disseminate, distribute or copy this e-mail. Please notify the sender immediately by e-mail if you have received this e-mail by mistake and delete this e-mail from your system. If you are not the intended recipient you are notified that disclosing, copying, distributing or taking any action in reliance on the contents of this information is strictly prohibited. |