From: Michael T. <tal...@ho...> - 2002-08-16 16:41:51
|
Dear PyMOL Users, This may have been answered before but I haven't found the answer yet. I have a script that has to iterate over a very large selection of atoms and when it runs it comes to a point where pymol shuts down and I recieve the message "Segmentation Fault" in my terminal window. I'm looking at trying to find out what this problem is and how do I go abot trying to correct it? Thanks for all your help, Michael Tallhamer Undergraduate Researcher Cleveland State University _________________________________________________________________ Chat with friends online, try MSN Messenger: http://messenger.msn.com |
From: Narin H. <nar...@ch...> - 2013-07-30 13:33:54
|
Hi all, I'm not very experienced with installing things from source, so you'll have to bear with me a bit here…. I'm trying to get pymol 1.6.0.0 working on my macbook (OS X 10.8.4). The install seems to go ok (home directory set to /sw) but when I try to launch pymol, it exits with this message: Detected OpenGL version 2.0 or greater. Shaders available. Detected GLSL version 1.20. OpenGL graphics engine: GL_VENDOR: NVIDIA Corporation GL_RENDERER: NVIDIA GeForce GT 650M OpenGL Engine GL_VERSION: 2.1 NVIDIA-8.12.47 310.40.00.05f01 Detected 8 CPU cores. Enabled multithreaded rendering. libpng warning: Application built with libpng-1.5.11 but running with 1.6.3 /sw/bin/pymol: line 4: 86592 Segmentation fault: 11 "/sw/bin/python" "/sw/lib/python/pymol/__init__.py" "$@" The version of python I have is 2.7.5 . If I just do "python /sw/lib/python/pymol/__init__.py" then I get the segmentation fault 11 error. Can anyone help me fix this? Thanks, Narin |
From: Sampson, J. <Jar...@ny...> - 2013-10-04 05:12:00
|
Hi Narin - Hope you don't mind me reviving an old thread, but I just ran into this same problem trying to build Pymol from source (and using fink for the dependencies) on my laptop. What solved it for me was the following: fink remove libpng16 libpng16-shlibs I guess pymol was trying to use libpng-1.6 because it was available at runtime, but the fink package still specifies version 1.5 as a dependency. Fortunately, I had nothing else that depended on version 1.6, so uninstalling it was no problem. Hope that helps, Jared -- Jared Sampson Xiangpeng Kong Lab NYU Langone Medical Center Medical Science Building, Room 398 550 First Avenue New York, NY 10016 212-263-7898 http://kong.med.nyu.edu/ On Jul 30, 2013, at 9:33 AM, Narin Hengrung <nar...@ch...<mailto:nar...@ch...>> wrote: Hi all, I'm not very experienced with installing things from source, so you'll have to bear with me a bit here…. I'm trying to get pymol 1.6.0.0 working on my macbook (OS X 10.8.4). The install seems to go ok (home directory set to /sw) but when I try to launch pymol, it exits with this message: Detected OpenGL version 2.0 or greater. Shaders available. Detected GLSL version 1.20. OpenGL graphics engine: GL_VENDOR: NVIDIA Corporation GL_RENDERER: NVIDIA GeForce GT 650M OpenGL Engine GL_VERSION: 2.1 NVIDIA-8.12.47 310.40.00.05f01 Detected 8 CPU cores. Enabled multithreaded rendering. libpng warning: Application built with libpng-1.5.11 but running with 1.6.3 /sw/bin/pymol: line 4: 86592 Segmentation fault: 11 "/sw/bin/python" "/sw/lib/python/pymol/__init__.py" "$@" The version of python I have is 2.7.5 . If I just do "python /sw/lib/python/pymol/__init__.py" then I get the segmentation fault 11 error. Can anyone help me fix this? Thanks, Narin ------------------------------------------------------------------------------ Get your SQL database under version control now! Version control is standard for application code, but databases havent caught up. So what steps can you take to put your SQL databases under version control? Why should you start doing it? Read more to find out. http://pubads.g.doubleclick.net/gampad/clk?id=49501711&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyM...@li...) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pym...@li... |