From: DeLano S. <de...@de...> - 2008-07-30 00:03:36
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Richard, > label (residue 200 and name ca), "My favorite C_alpha" The command you provided works as written, so what are you asking exactly? Is is that you want us to add a GUI way of doing this? Cheers, Warren -- DeLano Scientific LLC Subscriber Support Services mailto:su...@de... -----Original Message----- From: pym...@li... [mailto:pym...@li...] On Behalf Of Richard Baxter Sent: Tuesday, July 29, 2008 4:31 PM To: pym...@li... Subject: Re: [PyMOL] label with arbitrary string Dear All, Can someone advise me how to insert a label with an arbitrary string, e.g. label (residue 200 and name ca), "My favorite C_alpha" Thanks for your help, Richard Baxter ------------------------------------------------------------------------- This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ _______________________________________________ PyMOL-users mailing list PyM...@li... https://lists.sourceforge.net/lists/listinfo/pymol-users |
From: Chavas L. <pym...@gm...> - 2008-07-30 08:06:34
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Dear all -- On 30 Jul 2008, at 01:03, DeLano Scientific wrote: > Richard, > >> label (residue 200 and name ca), "My favorite C_alpha" > > The command you provided works as written, so what are you asking > exactly? > > Is is that you want us to add a GUI way of doing this? Related to labeling, I was wondering how to insert symbol labels such as "angstrom", or "alpha" etc., even the "copyright" symbol? I've tried in the past, without much success. I know it will be easier to do it via an external program such as Gimp, but I'm asking in the idea to generate a line at the bottom of the picture for copyright purpose, when I'm generating hundreds of pictures for building a movie... Do I have to link the font library to the library I've got on my computer? Kind regards. -- Leo -- ------------------------------------------------------------ Chavas Leonard, Ph.D. @ home Research Associate ------------------------------------------------------------ Faculty of Life Sciences The University of Manchester The Michael Smith Building Oxford Road Manchester Lancashire M13 9PT ------------------------------------------------------------ Tel: +44(0)161-275-1586 e-mail: Leo...@ma... http://personalpages.manchester.ac.uk/staff/leonard.chavas/ |
From: Tsjerk W. <ts...@gm...> - 2008-07-30 09:18:50
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Hi Leo, AFAIK you can't do it with Pymol, as it would require additional fonts. Also, it seems tough to me to position to label properly with respect to the camera. But you have plenty control with convert/imagemagick (see http://www.imagemagick.org/Usage/annotating/). That will allow you to process your images script-wise, I think even using whatever font you want (although copyright 2008 or (c)2008 will probably also do ;) see the examples). Hope it helps, Tsjerk On Wed, Jul 30, 2008 at 10:27 AM, Chavas Leo <pym...@gm...> wrote: > Dear all -- > On 30 Jul 2008, at 01:03, DeLano Scientific wrote: > > Richard, > > label (residue 200 and name ca), "My favorite C_alpha" > > The command you provided works as written, so what are you asking exactly? > > Is is that you want us to add a GUI way of doing this? > > Related to labeling, I was wondering how to insert symbol labels such as > "angstrom", or "alpha" etc., even the "copyright" symbol? > I've tried in the past, without much success. I know it will be easier to do > it via an external program such as Gimp, but I'm asking in the idea to > generate a line at the bottom of the picture for copyright purpose, when I'm > generating hundreds of pictures for building a movie... Do I have to link > the font library to the library I've got on my computer? > Kind regards. > -- Leo -- > ------------------------------------------------------------ > Chavas Leonard, Ph.D. @ home > Research Associate > ------------------------------------------------------------ > Faculty of Life Sciences > The University of Manchester > The Michael Smith Building > Oxford Road > Manchester Lancashire > M13 9PT > ------------------------------------------------------------ > Tel: +44(0)161-275-1586 > e-mail: Leo...@ma... > http://personalpages.manchester.ac.uk/staff/leonard.chavas/ > > > > ------------------------------------------------------------------------- > This SF.Net email is sponsored by the Moblin Your Move Developer's challenge > Build the coolest Linux based applications with Moblin SDK & win great > prizes > Grand prize is a trip for two to an Open Source event anywhere in the world > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users > > -- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623 |
From: Marius R. <mar...@gm...> - 2008-07-30 10:01:35
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Hello Leo, You could use Unicode to get the special characters you were taking about. angstrom = u"\u00C5" angstrom_utf8 = angstrom.encode ('utf-8') label (residue 200 and name ca), "Distance: 8"+angstrom_utf8 To see the label bigger use set label_size, 20 You can get the unicode charts from here http://www.unicode.org/charts On Wed, Jul 30, 2008 at 11:18 AM, Tsjerk Wassenaar <ts...@gm...>wrote: > Hi Leo, > > AFAIK you can't do it with Pymol, as it would require additional > fonts. Also, it seems tough to me to position to label properly with > respect to the camera. But you have plenty control with > convert/imagemagick (see > http://www.imagemagick.org/Usage/annotating/). That will allow you to > process your images script-wise, I think even using whatever font you > want (although copyright 2008 or (c)2008 will probably also do ;) see > the examples). > > Hope it helps, > > Tsjerk > > On Wed, Jul 30, 2008 at 10:27 AM, Chavas Leo <pym...@gm...> > wrote: > > Dear all -- > > On 30 Jul 2008, at 01:03, DeLano Scientific wrote: > > > > Richard, > > > > label (residue 200 and name ca), "My favorite C_alpha" > > > > The command you provided works as written, so what are you asking > exactly? > > > > Is is that you want us to add a GUI way of doing this? > > > > Related to labeling, I was wondering how to insert symbol labels such as > > "angstrom", or "alpha" etc., even the "copyright" symbol? > > I've tried in the past, without much success. I know it will be easier to > do > > it via an external program such as Gimp, but I'm asking in the idea to > > generate a line at the bottom of the picture for copyright purpose, when > I'm > > generating hundreds of pictures for building a movie... Do I have to link > > the font library to the library I've got on my computer? > > Kind regards. > > -- Leo -- > > ------------------------------------------------------------ > > Chavas Leonard, Ph.D. @ home > > Research Associate > > ------------------------------------------------------------ > > Faculty of Life Sciences > > The University of Manchester > > The Michael Smith Building > > Oxford Road > > Manchester Lancashire > > M13 9PT > > ------------------------------------------------------------ > > Tel: +44(0)161-275-1586 > > e-mail: Leo...@ma... > > http://personalpages.manchester.ac.uk/staff/leonard.chavas/ > > > > > > > > ------------------------------------------------------------------------- > > This SF.Net email is sponsored by the Moblin Your Move Developer's > challenge > > Build the coolest Linux based applications with Moblin SDK & win great > > prizes > > Grand prize is a trip for two to an Open Source event anywhere in the > world > > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > > _______________________________________________ > > PyMOL-users mailing list > > PyM...@li... > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > > > > > > -- > Tsjerk A. Wassenaar, Ph.D. > Junior UD (post-doc) > Biomolecular NMR, Bijvoet Center > Utrecht University > Padualaan 8 > 3584 CH Utrecht > The Netherlands > P: +31-30-2539931 > F: +31-30-2537623 > > ------------------------------------------------------------------------- > This SF.Net email is sponsored by the Moblin Your Move Developer's > challenge > Build the coolest Linux based applications with Moblin SDK & win great > prizes > Grand prize is a trip for two to an Open Source event anywhere in the world > http://moblin-contest.org/redirect.php?banner_id=100&url=/ > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users > |
From: Chavas L. <pym...@gm...> - 2008-08-01 01:33:50
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Dear Tsjerk, Marius, and all -- Thanks for your answers. Both methods worked perfectly. I personally like the one from Tsjerk, as I can play a little bit more with the font. Kind regards. -- Leo -- ------------------------------------------------------------ Chavas Leonard, Ph.D. @ home Research Associate Marie Curie Actions Fellow ------------------------------------------------------------ Faculty of Life Sciences The University of Manchester The Michael Smith Building Oxford Road Manchester Lancashire M13 9PT ------------------------------------------------------------ Tel: +44(0)161-275-1586 e-mail: Leo...@ma... http://personalpages.manchester.ac.uk/staff/leonard.chavas/ |