pymol-users

[PyMOL] hi

[mohan r. <moh...@gm...>]

hi all:

[PyMOL] hi

[mohan r. <moh...@gm...>]

hi all:

    i am a new to pymol. could some one tell me more about the programs
involved in ligand interaction.....

   could i do protein protein interaction simulateions using pymol???

Re: [PyMOL] hi

[annalisa b. <ann...@gm...>]

I'm afraid not.
You should use docking programs (
http://en.wikipedia.org/wiki/Macromolecular_docking).
Cheers,
Annalisa

2010/2/24 mohan raj <moh...@gm...>

> hi all:
>
>     i am a new to pymol. could some one tell me more about the programs
> involved in ligand interaction.....
>
>    could i do protein protein interaction simulateions using pymol???
>
>
> ------------------------------------------------------------------------------
> Download Intel&#174; Parallel Studio Eval
> Try the new software tools for yourself. Speed compiling, find bugs
> proactively, and fine-tune applications for parallel performance.
> See why Intel Parallel Studio got high marks during beta.
> http://p.sf.net/sfu/intel-sw-dev
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>

Re: [PyMOL] hi

[Tsjerk W. <ts...@gm...>]

Hi Mohan Raj,

>From the description it is clear that Pymol is a *visualization*
program. So, no, it can not do simulations of any sort.

Cheers,

Tsjerk

On Wed, Feb 24, 2010 at 1:36 PM, mohan raj <moh...@gm...> wrote:
> hi all:
>
>     i am a new to pymol. could some one tell me more about the programs
> involved in ligand interaction.....
>
>    could i do protein protein interaction simulateions using pymol???
> ------------------------------------------------------------------------------
> Download Intel&#174; Parallel Studio Eval
> Try the new software tools for yourself. Speed compiling, find bugs
> proactively, and fine-tune applications for parallel performance.
> See why Intel Parallel Studio got high marks during beta.
> http://p.sf.net/sfu/intel-sw-dev
> _______________________________________________
> PyMOL-users mailing list (PyM...@li...)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pym...@li...
>



-- 
Tsjerk A. Wassenaar, Ph.D.

Computational Chemist
Medicinal Chemist
Neuropharmacologist

Re: [PyMOL] hi

[David H. <li...@co...>]

If you would like to use a server for protein-protein docking, you can
check out the nice list on the wikipedia page for CAPRI.

http://en.wikipedia.org/wiki/Critical_Assessment_of_PRediction_of_Interactions#List_of_predictions_servers_participating_in_CAPRI

If you're looking for actual pieces of software or more manual
approaches, you can look at the recent series of posts on the Rosetta
Design Group's blog that summarizes many of the talks from the CAPRI
assessment meeting in December.

http://rosettadesigngroup.com/blog/tag/capri/

Aslo, http://dx.doi.org/10.1016/j.sbi.2009.02.008 has a nice summary
of the various approaches.

-David

On Wed, Feb 24, 2010 at 7:36 AM, mohan raj <moh...@gm...> wrote:
> hi all:
>
>     i am a new to pymol. could some one tell me more about the programs
> involved in ligand interaction.....
>
>    could i do protein protein interaction simulateions using pymol???
> ------------------------------------------------------------------------------
> Download Intel&#174; Parallel Studio Eval
> Try the new software tools for yourself. Speed compiling, find bugs
> proactively, and fine-tune applications for parallel performance.
> See why Intel Parallel Studio got high marks during beta.
> http://p.sf.net/sfu/intel-sw-dev
> _______________________________________________
> PyMOL-users mailing list (PyM...@li...)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pym...@li...
>

[PyMOL] hi

[陈舜梅 <mag...@gm...>]

post to pymol mail list

Thank you very much!