pymol-users

[PyMOL] ObjectMapLoadDXFile-Error: Unable to open file!

[Alexei K. <avk...@uc...>]

Hello everybody,

I just started using APBS under WinXP with PyMOL 0.99.

I have used a similar combination under Linux with no problems before, 
but under Windows,
I get ObjectMapLoadDXFile-Error: Unable to open file!
message when I try to run APBS.I tried both, PyMOL and server generated 
pqr with little success.
Anyone has been able to run APBS under WinXP?

Thanks a ton,
Alexei.

[PyMOL] ObjectMapLoadDXFile-Error: Unable to open file!

[B. P. <pa...@gs...>]

Deal all,

I am using Pymol (recent ver 0.99), plugged-in with APBS, on Widows XP. =
When I run the APBS program (ver 0.4.0), I get the error message as"

New grid dimensions are [97, 97, 65]
 APBS Tools: coarse grid: (103.894,115.909,84.240)
 APBS Tools: fine grid: (81.114,88.182,69.553)
 APBS Tools: center: (11.253,-2.720,10.888)
 APBS Tools: fine grid points (97,97,65)
'D:\Program' is not recognized as an internal or external command, =
operable program or batch file.
ObjectMapLoadDXFile-Error: Unable to open file!

- something wrong in assigning a correct path name. How to fix this =
error? I appreciate for your valuable suggestions to overcome this =
problem.

-B. Padmanabhan.
Email: pa...@gs...

Re: [PyMOL] ObjectMapLoadDXFile-Error: Unable to open file!

[Peter A. M. <pa...@co...>]

Hi,

> 'D:\Program' is not recognized as an internal or external command,
operable program or batch file.
> ObjectMapLoadDXFile-Error: Unable to open file!
>
> - something wrong in assigning a correct path name. How to fix this
error?
> I appreciate for your valuable suggestions to overcome this problem.

You're correct about the source of the problem...pymol isn't happy with
the spaces in the filenames.  The easiest way to fix this would be to use
a path without spaces (aka d:\workspace), or a shortcut to that (have
d:\workspace as a shortcut to your real working directory).  I suspect
both of these would require admin permissions (to write to top level
directories, but I'm not completely farmiliar with the windows file
permissions or user permissions.

If you don't have admin access, then things get more complicated...You'd
need to quote the full path, and escape the quotation marks in the path.

Or wait for someone more experience with window to chime in with an easier
solution...

Hope this helps,

Pete

>
> -B. Padmanabhan.
> Email:
> pa...@gs...-------------------------------------------------------------------------
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Pete Meyer
Fu Lab
BMCB grad student
Cornell University

[PyMOL] pymol 0.99 msvcr71.dll startup crash

[Guillaume L. <gui...@ce...>]

Hi pymol user



I have been unable to run the new 0.99 version of pymol on a windows xp 
laptop.
The app crash at startup saying it has been unable to find "msvcr71.dll".
Il reinstalled, old beta version 0.99beta32 and everything run perfectly ...

Any idea ?


Thank you

Guillaume

Re: [PyMOL] pymol 0.99 msvcr71.dll startup crash

[Yusuf T. <tan...@bi...>]

Hi,

I had the same problem with the new release of PyMOL. Just search for 
the requested file "msvcr71.dll" on your windows computer and copy it 
into the folder "c:\windows\system\". PyMOL will do its job on next startup.

If you do not have the file, just google for it. There are a lot of 
pages who are offering dll-files.

Cheers

YT


Guillaume LETELLIER wrote:
> Hi pymol user
> 
> 
> 
> I have been unable to run the new 0.99 version of pymol on a windows xp 
> laptop.
> The app crash at startup saying it has been unable to find "msvcr71.dll".
> Il reinstalled, old beta version 0.99beta32 and everything run perfectly 
> ...
> 
> Any idea ?
> 
> 
> Thank you
> 
> Guillaume
> 
> 
> -------------------------------------------------------
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-- 
Yusuf Tanrikulu
Bioinformatics PhD student
Johann Wolfgang Goethe-Universität Frankfurt
Department of Biosciences
Siesmayerstrasse 70
60323 Frankfurt
Tel: (+49) 069/79824879
Fax: (+49) 069/79824880
tan...@bi...

Re: [PyMOL] pymol 0.99 msvcr71.dll startup crash

[Charlie M. <cw...@gm...>]

I want to reiterate you don't need this file at linking time, so
hopefully future builds of pymol won't use it and hopefully no one
will run into this problem.

On 2/10/06, Yusuf Tanrikulu <tan...@bi...> wrot=
e:
> Hi,
>
> I had the same problem with the new release of PyMOL. Just search for
> the requested file "msvcr71.dll" on your windows computer and copy it
> into the folder "c:\windows\system\". PyMOL will do its job on next start=
up.
>
> If you do not have the file, just google for it. There are a lot of
> pages who are offering dll-files.
>
> Cheers
>
> YT
>
>
> Guillaume LETELLIER wrote:
> > Hi pymol user
> >
> >
> >
> > I have been unable to run the new 0.99 version of pymol on a windows xp
> > laptop.
> > The app crash at startup saying it has been unable to find "msvcr71.dll=
".
> > Il reinstalled, old beta version 0.99beta32 and everything run perfectl=
y
> > ...
> >
> > Any idea ?
> >
> >
> > Thank you
> >
> > Guillaume
> >
> >
> > -------------------------------------------------------
> > This SF.net email is sponsored by: Splunk Inc. Do you grep through log
> > files
> > for problems?  Stop!  Download the new AJAX search engine that makes
> > searching your log files as easy as surfing the  web.  DOWNLOAD SPLUNK!
> > http://sel.as-us.falkag.net/sel?cmd=3Dlnk&kid=3D103432&bid=3D230486&dat=
=3D121642
> > _______________________________________________
> > PyMOL-users mailing list
> > PyM...@li...
> > https://lists.sourceforge.net/lists/listinfo/pymol-users
>
> --
> Yusuf Tanrikulu
> Bioinformatics PhD student
> Johann Wolfgang Goethe-Universit=E4t Frankfurt
> Department of Biosciences
> Siesmayerstrasse 70
> 60323 Frankfurt
> Tel: (+49) 069/79824879
> Fax: (+49) 069/79824880
> tan...@bi...
>
>
> -------------------------------------------------------
> This SF.net email is sponsored by: Splunk Inc. Do you grep through log fi=
les
> for problems?  Stop!  Download the new AJAX search engine that makes
> searching your log files as easy as surfing the  web.  DOWNLOAD SPLUNK!
> http://sel.as-us.falkag.net/sel?cmd=3Dlnk&kid=3D103432&bid=3D230486&dat=
=3D121642
> _______________________________________________
> PyMOL-users mailing list
> PyM...@li...
> https://lists.sourceforge.net/lists/listinfo/pymol-users
>