From: Matthew B. <mp...@pi...> - 2012-07-24 19:34:53
|
Hi, I wrote a short script that I am going to use in pymol. I need to parse a json file and then display the contents in some manner. It works just fine in Ubuntu 12.04, but when I try it on OSX, it doesn't work. The problem that I am having is that when I try `import simplejson` or `import json` it throws an ImportError. I assume that this is related to the PYTHON_PATH variable, but thus far my google-fu has come up short. I've tried it in both pymol version 1.3 and 1.5.0.3. Any help would be appreciated. Thanks, Matt Baumgartner Technical Details: pymol 1.5.0.3 and 1.3 OSX 10.6.8 |
From: Troels E. L. <tl...@gm...> - 2012-07-25 08:17:08
|
Hi. You probably want to make sure your file is somewhere in your system path. write in pymol import sys print sys.path Then locate a directory where you can store your file. You can also make some kung-fu, and add to the PYTHONPATH: You could have a start script something like this #!/bin/bash export FREEMOL=/xxx/software/pymolsvn/svnfreemol/freemol export PYMOL_GIT_MOD=/xxx/software/pymolsvn/Pymol-script-repo/modules export PYTHONPATH=$PYTHONPATH:/xxx/software/x64/lib64/python2.6/site-packages/PIL export PYTHONPATH=$PYTHONPATH:/xxx/software/x64/lib64/python2.6/site-packages/lib-tk export PYTHONPATH=$PYTHONPATH:/xxx/software/x64/lib64/python2.6/site-packages/lib-dynload export PYTHONPATH=/xxx/software/pymolsvn/Pymol-script-repo/modules:$PYTHONPATH export PYTHONPATH=/xxx/software/pymolsvn/Pymol-script-repo:$PYTHONPATH export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/xxx/software/x64/lib/pymollib export LIBGL_ALWAYS_INDIRECT=no /usr/bin/python /xxx/software/pymolsvn/modules/pymol/__init__.py "$@" Troels Emtekær Linnet Ved kløvermarken 9, 1.th 2300 København S Mobil: +45 60210234 2012/7/24 Matthew Baumgartner <mp...@pi...> > Hi, > I wrote a short script that I am going to use in pymol. I need to parse > a json file and then display the contents in some manner. It works just > fine in Ubuntu 12.04, but when I try it on OSX, it doesn't work. The > problem that I am having is that when I try `import simplejson` or > `import json` it throws an ImportError. > > I assume that this is related to the PYTHON_PATH variable, but thus far > my google-fu has come up short. > I've tried it in both pymol version 1.3 and 1.5.0.3. > > Any help would be appreciated. > > Thanks, > Matt Baumgartner > > > Technical Details: > pymol 1.5.0.3 and 1.3 > OSX 10.6.8 > > > > ------------------------------------------------------------------------------ > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... > |