From: Chandan C. <ii...@gm...> - 2009-09-23 04:26:16
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Hello all!! I am required to mutate one of the atom of a protein (pdb file) with some groups of atoms. Pymol features us to mutate a residu with another amino acid, but I cannot mutate an atom with some other group that are not amino acids. So, how can I do it. Please help. Also I want to know the theory behind the mutation of residue done by pymol. Thanks Chandan -- Chandan kumar Choudhury NCL, Pune INDIA |
From: lina <lin...@gm...> - 2011-04-27 08:04:05
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How can I mutate one residue into another in pymol? I tried the wizard--> mutagenesis--> but nothing coming out after done. I might understand wrong. Please let me know. -- Thanks and best regards, lina |
From: mohan r. <moh...@gm...> - 2011-04-27 10:18:48
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Hi lina: After you reached the mutagenisis wizzard, click on the amino acid you wish to mutate. To subsitute another amino acid, click on "no mutation" icon in the wizzard. then you can see all the other aminoacid appearing. From the list click the one you wish to include and say ok. Jobs done!!! -mohan On Wed, Apr 27, 2011 at 1:33 PM, lina <lin...@gm...> wrote: > How can I mutate one residue into another in pymol? > > I tried the wizard--> mutagenesis--> > but nothing coming out after done. > > I might understand wrong. > > Please let me know. > > -- > Thanks and best regards, > > lina > > > ------------------------------------------------------------------------------ > WhatsUp Gold - Download Free Network Management Software > The most intuitive, comprehensive, and cost-effective network > management toolset available today. Delivers lowest initial > acquisition cost and overall TCO of any competing solution. > http://p.sf.net/sfu/whatsupgold-sd > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... > |