Hi Hena,
you don't need to edit the script. If you paste the script to a file
named script.py, then you can continue by typing into the PyMOL command
line:
run script.py
angle_between_helices chain A and resi 6-20, chain A and resi 26-39
Cheers,
Thomas
Hena Dutta wrote, On 11/22/11 20:50:
> Hi,
>
> Can anyone guide me how to use the pymol script to calculate the angle
> between two helices?
> Where and how to edit the script? I have 2 helices in a pdb file as follows:
>
> protein.pdb
> hel1 is chain A: 6-20
> hel2 is chain A: 26-39
>
> Thanking you in advance...
> Hena
--
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen
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