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From: lina <lin...@gm...> - 2011-10-11 07:59:41
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Hi, I wish to change ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02 .296 H ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 -0.01 .122 C to: ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02 H ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 -0.01 C only the last field. How can I quickly achieve it. Thanks, |
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From: Tsjerk W. <ts...@gm...> - 2011-10-11 08:16:59
|
Hi Lina,
Not really a Pymol question, is it?
On linux you can use sed:
sed '/^\(ATOM\|HETA\)/s/^\(.\{72\}\)..../\1 /' filein.pdb > fileout.pdb
That means:
/^\(ATOM\|HETA\)/ :: Match lines starting with ATOM or with HETA, and
on those lines execute:
s/^\(.\{72\}\)..../\1 / :: Subsitute the first 72 characters and
the following four by the first 72 and four spaces. '\1' refers to the
72 stored characters: \(.\{72\}\}
Hope it helps,
Tsjerk
On Tue, Oct 11, 2011 at 9:59 AM, lina <lin...@gm...> wrote:
> Hi,
>
> I wish to change
>
> ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02 .296
> H
> ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 -0.01 .122
> C
>
> to:
>
> ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11
> 0.02 H
> ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18
> -0.01 C
>
> only the last field.
>
> How can I quickly achieve it.
>
> Thanks,
>
>
>
> ------------------------------------------------------------------------------
> All the data continuously generated in your IT infrastructure contains a
> definitive record of customers, application performance, security
> threats, fraudulent activity and more. Splunk takes this data and makes
> sense of it. Business sense. IT sense. Common sense.
> http://p.sf.net/sfu/splunk-d2d-oct
> _______________________________________________
> PyMOL-users mailing list (PyM...@li...)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pym...@li...
>
--
Tsjerk A. Wassenaar, Ph.D.
post-doctoral researcher
Molecular Dynamics Group
* Groningen Institute for Biomolecular Research and Biotechnology
* Zernike Institute for Advanced Materials
University of Groningen
The Netherlands
|
|
From: Thomas H. <sp...@us...> - 2011-10-11 08:24:59
|
On 10/11/2011 10:16 AM, Tsjerk Wassenaar wrote:
> Not really a Pymol question, is it?
well, it's the segment identifier column, so you can do with PyMOL:
set pdb_retain_ids
load input.pdb
alter all, segi=''
save output.pdb
Cheers,
Thomas
> On linux you can use sed:
>
> sed '/^\(ATOM\|HETA\)/s/^\(.\{72\}\)..../\1 /' filein.pdb> fileout.pdb
>
> That means:
>
> /^\(ATOM\|HETA\)/ :: Match lines starting with ATOM or with HETA, and
> on those lines execute:
> s/^\(.\{72\}\)..../\1 / :: Subsitute the first 72 characters and
> the following four by the first 72 and four spaces. '\1' refers to the
> 72 stored characters: \(.\{72\}\}
>
> Hope it helps,
>
> Tsjerk
>
>
> On Tue, Oct 11, 2011 at 9:59 AM, lina<lin...@gm...> wrote:
>> Hi,
>>
>> I wish to change
>>
>> ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02 .296
>> H
>> ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 -0.01 .122
>> C
>>
>> to:
>>
>> ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11
>> 0.02 H
>> ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18
>> -0.01 C
>>
>> only the last field.
>>
>> How can I quickly achieve it.
>>
>> Thanks,
--
Thomas Holder
MPI for Developmental Biology
|
|
From: lina <lin...@gm...> - 2011-10-11 08:33:57
|
On Tue, Oct 11, 2011 at 4:24 PM, Thomas Holder <
sp...@us...> wrote:
> On 10/11/2011 10:16 AM, Tsjerk Wassenaar wrote:
>
>> Not really a Pymol question, is it?
>>
>
> well, it's the segment identifier column, so you can do with PyMOL:
>
> set pdb_retain_ids
> load input.pdb
> alter all, segi=''
> save output.pdb
>
Thanks,
a bit further question, how to add chain identifier in pymol?
Here the situation is the 6 small ligands shared the same resn and even same
resi,
> Cheers,
> Thomas
>
>
> On linux you can use sed:
>>
>> sed '/^\(ATOM\|HETA\)/s/^\(.\{72\}**\)..../\1 /' filein.pdb>
>> fileout.pdb
>>
>> That means:
>>
>> /^\(ATOM\|HETA\)/ :: Match lines starting with ATOM or with HETA, and
>> on those lines execute:
>> s/^\(.\{72\}\)..../\1 / :: Subsitute the first 72 characters and
>> the following four by the first 72 and four spaces. '\1' refers to the
>> 72 stored characters: \(.\{72\}\}
>>
>> Hope it helps,
>>
>> Tsjerk
>>
>>
>> On Tue, Oct 11, 2011 at 9:59 AM, lina<lin...@gm...> wrote:
>>
>>> Hi,
>>>
>>> I wish to change
>>>
>>> ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02
>>> .296
>>> H
>>> ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 -0.01
>>> .122
>>> C
>>>
>>> to:
>>>
>>> ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11
>>> 0.02 H
>>> ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18
>>> -0.01 C
>>>
>>> only the last field.
>>>
>>> How can I quickly achieve it.
>>>
>>> Thanks,
>>>
>>
> --
> Thomas Holder
> MPI for Developmental Biology
>
|
|
From: Tsjerk W. <ts...@gm...> - 2011-10-11 08:37:19
|
Hi Lina,
That's best done following Thomas' approach, but using chain="X" in
stead of segi=''
set pdb_retain_ids
load input.pdb
alter selection, chain='X'
save output.pdb
Cheers,
Tsjerk
On Tue, Oct 11, 2011 at 10:33 AM, lina <lin...@gm...> wrote:
>
>
> On Tue, Oct 11, 2011 at 4:24 PM, Thomas Holder
> <sp...@us...> wrote:
>>
>> On 10/11/2011 10:16 AM, Tsjerk Wassenaar wrote:
>>>
>>> Not really a Pymol question, is it?
>>
>> well, it's the segment identifier column, so you can do with PyMOL:
>>
>> set pdb_retain_ids
>> load input.pdb
>> alter all, segi=''
>> save output.pdb
>
> Thanks,
>
> a bit further question, how to add chain identifier in pymol?
>
> Here the situation is the 6 small ligands shared the same resn and even same
> resi,
>
>
>>
>> Cheers,
>> Thomas
>>
>>> On linux you can use sed:
>>>
>>> sed '/^\(ATOM\|HETA\)/s/^\(.\{72\}\)..../\1 /' filein.pdb>
>>> fileout.pdb
>>>
>>> That means:
>>>
>>> /^\(ATOM\|HETA\)/ :: Match lines starting with ATOM or with HETA, and
>>> on those lines execute:
>>> s/^\(.\{72\}\)..../\1 / :: Subsitute the first 72 characters and
>>> the following four by the first 72 and four spaces. '\1' refers to the
>>> 72 stored characters: \(.\{72\}\}
>>>
>>> Hope it helps,
>>>
>>> Tsjerk
>>>
>>>
>>> On Tue, Oct 11, 2011 at 9:59 AM, lina<lin...@gm...> wrote:
>>>>
>>>> Hi,
>>>>
>>>> I wish to change
>>>>
>>>> ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02
>>>> .296
>>>> H
>>>> ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 -0.01
>>>> .122
>>>> C
>>>>
>>>> to:
>>>>
>>>> ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11
>>>> 0.02 H
>>>> ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18
>>>> -0.01 C
>>>>
>>>> only the last field.
>>>>
>>>> How can I quickly achieve it.
>>>>
>>>> Thanks,
>>
>> --
>> Thomas Holder
>> MPI for Developmental Biology
>
>
> ------------------------------------------------------------------------------
> All the data continuously generated in your IT infrastructure contains a
> definitive record of customers, application performance, security
> threats, fraudulent activity and more. Splunk takes this data and makes
> sense of it. Business sense. IT sense. Common sense.
> http://p.sf.net/sfu/splunk-d2d-oct
> _______________________________________________
> PyMOL-users mailing list (PyM...@li...)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pym...@li...
>
--
Tsjerk A. Wassenaar, Ph.D.
post-doctoral researcher
Molecular Dynamics Group
* Groningen Institute for Biomolecular Research and Biotechnology
* Zernike Institute for Advanced Materials
University of Groningen
The Netherlands
|
|
From: Marius R. <mar...@gm...> - 2011-10-11 08:42:29
|
Dear Lina, I don't want to be rude, but you should read this part of a document on how to ask questions on a mailing list http://catb.org/~esr/faqs/smart-questions.html#before. Some of the question that you posted on this mailing list could have been solved by a simple Google search. Best regards, Marius -- Département de Chimie Moléculaire Université Joseph Fourier 301 Rue de la Chimie BP 53, 38041 Grenoble Cedex 9, France Tel: +33 (0) 4 76 63 44 03 GnuPG http://db.tt/rr7Hd0Y On Tue, Oct 11, 2011 at 10:37 AM, Tsjerk Wassenaar <ts...@gm...> wrote: > Hi Lina, > > That's best done following Thomas' approach, but using chain="X" in > stead of segi='' > > set pdb_retain_ids > load input.pdb > alter selection, chain='X' > save output.pdb > > Cheers, > > Tsjerk > > On Tue, Oct 11, 2011 at 10:33 AM, lina <lin...@gm...> wrote: >> >> >> On Tue, Oct 11, 2011 at 4:24 PM, Thomas Holder >> <sp...@us...> wrote: >>> >>> On 10/11/2011 10:16 AM, Tsjerk Wassenaar wrote: >>>> >>>> Not really a Pymol question, is it? >>> >>> well, it's the segment identifier column, so you can do with PyMOL: >>> >>> set pdb_retain_ids >>> load input.pdb >>> alter all, segi='' >>> save output.pdb >> >> Thanks, >> >> a bit further question, how to add chain identifier in pymol? >> >> Here the situation is the 6 small ligands shared the same resn and even same >> resi, >> >> >>> >>> Cheers, >>> Thomas >>> >>>> On linux you can use sed: >>>> >>>> sed '/^\(ATOM\|HETA\)/s/^\(.\{72\}\)..../\1 /' filein.pdb> >>>> fileout.pdb >>>> >>>> That means: >>>> >>>> /^\(ATOM\|HETA\)/ :: Match lines starting with ATOM or with HETA, and >>>> on those lines execute: >>>> s/^\(.\{72\}\)..../\1 / :: Subsitute the first 72 characters and >>>> the following four by the first 72 and four spaces. '\1' refers to the >>>> 72 stored characters: \(.\{72\}\} >>>> >>>> Hope it helps, >>>> >>>> Tsjerk >>>> >>>> >>>> On Tue, Oct 11, 2011 at 9:59 AM, lina<lin...@gm...> wrote: >>>>> >>>>> Hi, >>>>> >>>>> I wish to change >>>>> >>>>> ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02 >>>>> .296 >>>>> H >>>>> ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 -0.01 >>>>> .122 >>>>> C >>>>> >>>>> to: >>>>> >>>>> ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 >>>>> 0.02 H >>>>> ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 >>>>> -0.01 C >>>>> >>>>> only the last field. >>>>> >>>>> How can I quickly achieve it. >>>>> >>>>> Thanks, >>> >>> -- >>> Thomas Holder >>> MPI for Developmental Biology >> >> >> ------------------------------------------------------------------------------ >> All the data continuously generated in your IT infrastructure contains a >> definitive record of customers, application performance, security >> threats, fraudulent activity and more. Splunk takes this data and makes >> sense of it. Business sense. IT sense. Common sense. >> http://p.sf.net/sfu/splunk-d2d-oct >> _______________________________________________ >> PyMOL-users mailing list (PyM...@li...) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pym...@li... >> > > > > -- > Tsjerk A. Wassenaar, Ph.D. > > post-doctoral researcher > Molecular Dynamics Group > * Groningen Institute for Biomolecular Research and Biotechnology > * Zernike Institute for Advanced Materials > University of Groningen > The Netherlands > > ------------------------------------------------------------------------------ > All the data continuously generated in your IT infrastructure contains a > definitive record of customers, application performance, security > threats, fraudulent activity and more. Splunk takes this data and makes > sense of it. Business sense. IT sense. Common sense. > http://p.sf.net/sfu/splunk-d2d-oct > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... > |
|
From: lina <lin...@gm...> - 2011-10-11 08:48:04
|
On Tue, Oct 11, 2011 at 4:41 PM, Marius Retegan <mar...@gm...>wrote: > Dear Lina, > > I don't want to be rude, but you should read this part of a document > on how to ask questions on a mailing list > http://catb.org/~esr/faqs/smart-questions.html#before. > Some of the question that you posted on this mailing list could have > been solved by a simple Google search. > Sorry. But I did a very rough search about how to add chain identifier. did not notice the one for adding to some one like, with the same resn and resi, I have 7 moleculars shared the same resn and resi, Actually I am kinda of unconsciously self-blame myself, for lots of things unable not dive into it, so far it's a great pity to me. Thanks for your advice, Best regards, > > Best regards, > Marius > > -- > Département de Chimie Moléculaire > Université Joseph Fourier > 301 Rue de la Chimie > BP 53, 38041 Grenoble Cedex 9, France > Tel: +33 (0) 4 76 63 44 03 > > GnuPG http://db.tt/rr7Hd0Y > > > > On Tue, Oct 11, 2011 at 10:37 AM, Tsjerk Wassenaar <ts...@gm...> > wrote: > > Hi Lina, > > > > That's best done following Thomas' approach, but using chain="X" in > > stead of segi='' > > > > set pdb_retain_ids > > load input.pdb > > alter selection, chain='X' > > save output.pdb > > > > Cheers, > > > > Tsjerk > > > > On Tue, Oct 11, 2011 at 10:33 AM, lina <lin...@gm...> wrote: > >> > >> > >> On Tue, Oct 11, 2011 at 4:24 PM, Thomas Holder > >> <sp...@us...> wrote: > >>> > >>> On 10/11/2011 10:16 AM, Tsjerk Wassenaar wrote: > >>>> > >>>> Not really a Pymol question, is it? > >>> > >>> well, it's the segment identifier column, so you can do with PyMOL: > >>> > >>> set pdb_retain_ids > >>> load input.pdb > >>> alter all, segi='' > >>> save output.pdb > >> > >> Thanks, > >> > >> a bit further question, how to add chain identifier in pymol? > >> > >> Here the situation is the 6 small ligands shared the same resn and even > same > >> resi, > >> > >> > >>> > >>> Cheers, > >>> Thomas > >>> > >>>> On linux you can use sed: > >>>> > >>>> sed '/^\(ATOM\|HETA\)/s/^\(.\{72\}\)..../\1 /' filein.pdb> > >>>> fileout.pdb > >>>> > >>>> That means: > >>>> > >>>> /^\(ATOM\|HETA\)/ :: Match lines starting with ATOM or with HETA, and > >>>> on those lines execute: > >>>> s/^\(.\{72\}\)..../\1 / :: Subsitute the first 72 characters and > >>>> the following four by the first 72 and four spaces. '\1' refers to the > >>>> 72 stored characters: \(.\{72\}\} > >>>> > >>>> Hope it helps, > >>>> > >>>> Tsjerk > >>>> > >>>> > >>>> On Tue, Oct 11, 2011 at 9:59 AM, lina<lin...@gm...> > wrote: > >>>>> > >>>>> Hi, > >>>>> > >>>>> I wish to change > >>>>> > >>>>> ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02 > >>>>> .296 > >>>>> H > >>>>> ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 -0.01 > >>>>> .122 > >>>>> C > >>>>> > >>>>> to: > >>>>> > >>>>> ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 > >>>>> 0.02 H > >>>>> ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 > >>>>> -0.01 C > >>>>> > >>>>> only the last field. > >>>>> > >>>>> How can I quickly achieve it. > >>>>> > >>>>> Thanks, > >>> > >>> -- > >>> Thomas Holder > >>> MPI for Developmental Biology > >> > >> > >> > ------------------------------------------------------------------------------ > >> All the data continuously generated in your IT infrastructure contains a > >> definitive record of customers, application performance, security > >> threats, fraudulent activity and more. Splunk takes this data and makes > >> sense of it. Business sense. IT sense. Common sense. > >> http://p.sf.net/sfu/splunk-d2d-oct > >> _______________________________________________ > >> PyMOL-users mailing list (PyM...@li...) > >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > >> Archives: http://www.mail-archive.com/pym...@li... > >> > > > > > > > > -- > > Tsjerk A. Wassenaar, Ph.D. > > > > post-doctoral researcher > > Molecular Dynamics Group > > * Groningen Institute for Biomolecular Research and Biotechnology > > * Zernike Institute for Advanced Materials > > University of Groningen > > The Netherlands > > > > > ------------------------------------------------------------------------------ > > All the data continuously generated in your IT infrastructure contains a > > definitive record of customers, application performance, security > > threats, fraudulent activity and more. Splunk takes this data and makes > > sense of it. Business sense. IT sense. Common sense. > > http://p.sf.net/sfu/splunk-d2d-oct > > _______________________________________________ > > PyMOL-users mailing list (PyM...@li...) > > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > > Archives: http://www.mail-archive.com/pym...@li... > > > |
|
From: Edward A. B. <Be...@up...> - 2011-10-11 14:10:26
|
Well, for me at least it is a good think Lina asked, because there were two different answers from the experts and i learned from each. I don't think we want to discourage or intimidate new users from asking questions. It is very easy to ignore or delete a silly email. Marius Retegan wrote: > Dear Lina, > > I don't want to be rude, but you should read this part of a document > on how to ask questions on a mailing list > http://catb.org/~esr/faqs/smart-questions.html#before. > Some of the question that you posted on this mailing list could have > been solved by a simple Google search. > > Best regards, > Marius > > -- > Département de Chimie Moléculaire > Université Joseph Fourier > 301 Rue de la Chimie > BP 53, 38041 Grenoble Cedex 9, France > Tel: +33 (0) 4 76 63 44 03 > > GnuPG http://db.tt/rr7Hd0Y > > > > On Tue, Oct 11, 2011 at 10:37 AM, Tsjerk Wassenaar<ts...@gm...> wrote: >> Hi Lina, >> >> That's best done following Thomas' approach, but using chain="X" in >> stead of segi='' >> >> set pdb_retain_ids >> load input.pdb >> alter selection, chain='X' >> save output.pdb >> >> Cheers, >> >> Tsjerk >> >> On Tue, Oct 11, 2011 at 10:33 AM, lina<lin...@gm...> wrote: >>> >>> >>> On Tue, Oct 11, 2011 at 4:24 PM, Thomas Holder >>> <sp...@us...> wrote: >>>> >>>> On 10/11/2011 10:16 AM, Tsjerk Wassenaar wrote: >>>>> >>>>> Not really a Pymol question, is it? >>>> >>>> well, it's the segment identifier column, so you can do with PyMOL: >>>> >>>> set pdb_retain_ids >>>> load input.pdb >>>> alter all, segi='' >>>> save output.pdb >>> >>> Thanks, >>> >>> a bit further question, how to add chain identifier in pymol? >>> >>> Here the situation is the 6 small ligands shared the same resn and even same >>> resi, >>> >>> >>>> >>>> Cheers, >>>> Thomas >>>> >>>>> On linux you can use sed: >>>>> >>>>> sed '/^\(ATOM\|HETA\)/s/^\(.\{72\}\)..../\1 /' filein.pdb> >>>>> fileout.pdb >>>>> >>>>> That means: >>>>> >>>>> /^\(ATOM\|HETA\)/ :: Match lines starting with ATOM or with HETA, and >>>>> on those lines execute: >>>>> s/^\(.\{72\}\)..../\1 / :: Subsitute the first 72 characters and >>>>> the following four by the first 72 and four spaces. '\1' refers to the >>>>> 72 stored characters: \(.\{72\}\} >>>>> >>>>> Hope it helps, >>>>> >>>>> Tsjerk >>>>> >>>>> >>>>> On Tue, Oct 11, 2011 at 9:59 AM, lina<lin...@gm...> wrote: >>>>>> >>>>>> Hi, >>>>>> >>>>>> I wish to change >>>>>> >>>>>> ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02 >>>>>> .296 >>>>>> H >>>>>> ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 -0.01 >>>>>> .122 >>>>>> C >>>>>> >>>>>> to: >>>>>> >>>>>> ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 >>>>>> 0.02 H >>>>>> ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 >>>>>> -0.01 C >>>>>> >>>>>> only the last field. >>>>>> >>>>>> How can I quickly achieve it. >>>>>> >>>>>> Thanks, >>>> >>>> -- >>>> Thomas Holder >>>> MPI for Developmental Biology >>> >>> >>> ------------------------------------------------------------------------------ >>> All the data continuously generated in your IT infrastructure contains a >>> definitive record of customers, application performance, security >>> threats, fraudulent activity and more. Splunk takes this data and makes >>> sense of it. Business sense. IT sense. Common sense. >>> http://p.sf.net/sfu/splunk-d2d-oct >>> _______________________________________________ >>> PyMOL-users mailing list (PyM...@li...) >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>> Archives: http://www.mail-archive.com/pym...@li... >>> >> >> >> >> -- >> Tsjerk A. Wassenaar, Ph.D. >> >> post-doctoral researcher >> Molecular Dynamics Group >> * Groningen Institute for Biomolecular Research and Biotechnology >> * Zernike Institute for Advanced Materials >> University of Groningen >> The Netherlands >> >> ------------------------------------------------------------------------------ >> All the data continuously generated in your IT infrastructure contains a >> definitive record of customers, application performance, security >> threats, fraudulent activity and more. Splunk takes this data and makes >> sense of it. Business sense. IT sense. Common sense. >> http://p.sf.net/sfu/splunk-d2d-oct >> _______________________________________________ >> PyMOL-users mailing list (PyM...@li...) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pym...@li... >> > > ------------------------------------------------------------------------------ > All the data continuously generated in your IT infrastructure contains a > definitive record of customers, application performance, security > threats, fraudulent activity and more. Splunk takes this data and makes > sense of it. Business sense. IT sense. Common sense. > http://p.sf.net/sfu/splunk-d2d-oct > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... > |
|
From: Francis E R. <Fra...@Co...> - 2011-10-11 12:14:04
|
The column editing mode of vim will do this in a jiffy. Ctrl-V, select the column(s), hit D. F On Oct 11, 2011, at 1:59 AM, lina wrote: > Hi, > > I wish to change > > ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02 .296 H > ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 -0.01 .122 C > > to: > > ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02 H > ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 -0.01 C > > only the last field. > > How can I quickly achieve it. > > Thanks, > > > ------------------------------------------------------------------------------ > All the data continuously generated in your IT infrastructure contains a > definitive record of customers, application performance, security > threats, fraudulent activity and more. Splunk takes this data and makes > sense of it. Business sense. IT sense. Common sense. > http://p.sf.net/sfu/splunk-d2d-oct_______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... |
|
From: Francis E R. <Fra...@Co...> - 2011-10-11 12:17:17
|
Oops , c then type new text then esc-esc. Haven't had my coffee yet. F On Oct 11, 2011, at 6:13 AM, Francis E Reyes wrote: > The column editing mode of vim will do this in a jiffy. > > Ctrl-V, select the column(s), hit D. > > F > > On Oct 11, 2011, at 1:59 AM, lina wrote: > >> Hi, >> >> I wish to change >> >> ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02 .296 H >> ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 -0.01 .122 C >> >> to: >> >> ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02 H >> ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 -0.01 C >> >> only the last field. >> >> How can I quickly achieve it. >> >> Thanks, >> >> >> ------------------------------------------------------------------------------ >> All the data continuously generated in your IT infrastructure contains a >> definitive record of customers, application performance, security >> threats, fraudulent activity and more. Splunk takes this data and makes >> sense of it. Business sense. IT sense. Common sense. >> http://p.sf.net/sfu/splunk-d2d-oct_______________________________________________ >> PyMOL-users mailing list (PyM...@li...) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pym...@li... > > > ------------------------------------------------------------------------------ > All the data continuously generated in your IT infrastructure contains a > definitive record of customers, application performance, security > threats, fraudulent activity and more. Splunk takes this data and makes > sense of it. Business sense. IT sense. Common sense. > http://p.sf.net/sfu/splunk-d2d-oct > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... |
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From: lina <lin...@gm...> - 2011-10-11 12:50:06
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On Tue, Oct 11, 2011 at 8:13 PM, Francis E Reyes <Fra...@co... > wrote: > The column editing mode of vim will do this in a jiffy. > > Ctrl-V, select the column(s), hit D. > Thanks, very nice. I did not realize that the vim can choose block. > > F > > On Oct 11, 2011, at 1:59 AM, lina wrote: > > > Hi, > > > > I wish to change > > > > ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02 > .296 H > > ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 -0.01 > .122 C > > > > to: > > > > ATOM 822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02 > H > > ATOM 823 C12 PDB 1 34.140 35.147 -0.218 -0.18 -0.01 > C > > > > only the last field. > > > > How can I quickly achieve it. > > > > Thanks, > > > > > > > ------------------------------------------------------------------------------ > > All the data continuously generated in your IT infrastructure contains a > > definitive record of customers, application performance, security > > threats, fraudulent activity and more. Splunk takes this data and makes > > sense of it. Business sense. IT sense. Common sense. > > > http://p.sf.net/sfu/splunk-d2d-oct_______________________________________________ > > PyMOL-users mailing list (PyM...@li...) > > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > > Archives: http://www.mail-archive.com/pym...@li... > > |
