From: Thomas Holder <speleo3@us...> - 2011-09-06 13:43:45
the only problem seems to be your last line, you save two objects (test,
1shr) to the same PDB file.
On 09/06/2011 03:25 PM, Rozaimi Razali wrote:
> Dear All,
> Sorry for the late reply and thank you for helping me out.
> Originally the wild residue (for 1shr) at position 36:B is a Proline. I
> want to mutate it to Histidine.
> I have tried the suggestion in this thread but the output file
> (kill.pdb) still gives PRO at position 36:B
> fetch 1shr, async=0
> create test, 1shr
> # Mutate
> # Save
> I am not sure what is the problem here. I have also tried running the
> script on other machines and still the same problem is happening. FYI i
> am using Pymol version 1.3. Could this be the problem?
> I have tried using the log function + mutagenesis wizard in Pymol GUI
> but something strange is happening. The position 36:B did changed to His
> input file - 1shr.pdb -> atom number for 36:B:CA is 1334
> output file - kill.pdb -> atom number 36:B:CA 1380
> log.pml -> ...byresi((1shr`1380))...
> Why does it tag the atom number from the output file? Shouldn't it tag
> the atom number from the input file (1shr)?
MPI for Developmental Biology