Hi Suda and Tsjerk,
there is "alignto" which used cealign. There is also in the menu "Action
> align > all to this" which uses cmd.util.mass_align (and that uses
cmd.align).
On Robert Campbell's site there is the "align_all.py" script:
http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/
On my PyMOLWiki user page there is a "extra_fit" script.
http://pymolwiki.org/index.php/User:Speleo3
All those align to a reference object (or state, in case of intra_fit)
instead of an all-against-all best fit.
Cheers,
Thomas
On 08/29/2011 08:52 AM, Tsjerk Wassenaar wrote:
> Hi Suda,
>
> Do you mean different structures of the same molecule or different
> molecules? For a multistate object, there is intra_fit. for selections
> comprising multiple objects it's not currently possible. But it's
> being worked on.
>
> Cheers,
>
> Tsjerk
>
> On Mon, Aug 29, 2011 at 8:43 AM, Suda Ravindran<bio...@gm...> wrote:
>> Hi,
>>
>> I would like to know how to do structure based superposition using PyMol for
>> 3 or more structures. Please help me out.
>>
>> Thanks,
>>
>> -Suda
--
Thomas Holder
MPI for Developmental Biology
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