From: hari j. <ha...@gm...> - 2010-02-26 16:08:52
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Hi , I generally track trunk on pymol , i.e I keep my Ubuntu 64 bit linux box updated with the latest subversion build. While compiling revision 3897. I had an error during the build while compiling Cmd.h saying it could not find "ce_types.h" That file does exist in trunk/pymol/modules/cealign/src/ce_types.h And copying it to trunk/pymol/layer4/ does make it compile fully , but then the built executable fails to launch with another error ( see below) So I am just wondering if anyone else is seeing this . Thanks for your help. Hari # Initial error without include of ce_types.h Cmd.c:87:21: error: ce_types.h: No such file or directory Cmd.c: In function ‘CmdCEAlign’: Cmd.c:8506: error: ‘pcePoint’ undeclared (first use in this function) Cmd.c:8506: error: (Each undeclared identifier is reported only once Cmd.c:8506: error: for each function it appears in.) Cmd.c:8506: error: expected ‘;’ before ‘coordsA’ Cmd.c:8507: error: ‘pathCache’ undeclared (first use in this function) Cmd.c:8507: error: expected ‘;’ before ‘paths’ Cmd.c:8540: error: ‘coordsA’ undeclared (first use in this function) Cmd.c:8540: error: expected ‘;’ before ‘getCoords’ Cmd.c:8541: error: ‘coordsB’ undeclared (first use in this function) Cmd.c:8541: error: expected ‘;’ before ‘getCoords’ Cmd.c:8544: warning: cast to pointer from integer of different size Cmd.c:8545: warning: cast to pointer from integer of different size Cmd.c:8548: warning: cast to pointer from integer of different size Cmd.c:8554: error: ‘paths’ undeclared (first use in this function) Cmd.c:8554: error: expected ‘;’ before ‘findPath’ Cmd.c:8557: warning: cast to pointer from integer of different size make[2]: *** [Cmd.lo] Error 1 make[2]: Leaving directory `/home/hari/pymol/trunk/pymol/layer4' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/home/hari/pymol/trunk/pymol' make: *** [all] Error 2 # Error on forced compiling after copying ce_types.h into include path Traceback (most recent call last): File "/home/hari/pymol/trunk/pymol/modules/launch_pymol.py", line 32, in <module> import pymol File "/home/hari/pymol/trunk/pymol/modules/pymol/__init__.py", line 472, in <module> import _cmd ImportError: /home/hari/pymol/trunk/pymol/modules/pymol/_cmd.so: undefined symbol: findBest |
From: Justin L. <j.l...@fz...> - 2010-02-26 17:03:45
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Hi Hari, the distutils based build is fine. justin |
From: hari j. <ha...@gm...> - 2010-02-26 17:35:08
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Sorry for crying wolf. Everything is working fine with svn 3897 . After Justins email I checked that my system python was suddenly set to a different python and things were probably not getting linked up correctly during building. Now I do get : 1) distutils builds fine 2) make , make install also builds fine Thanks again Hari On Fri, Feb 26, 2010 at 12:03 PM, Justin Lecher <j.l...@fz...>wrote: > Hi Hari, > > the distutils based build is fine. > > justin > > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... > |