From: Jan Kosinski <kosa@ge...> - 2009-04-28 13:57:48
I am visualizing in PyMol electrostatic potential generated by PBEQ
Solver from CHARMM-GUI at http://www.charmm-gui.org/?doc=input/pbeqsolver
The maps loads and colors nicely with the following commands suggested
by the PBEQ Solver server:
load 1zziA_pbeq.dx, 1zziA_map
show surface, 1zziA_pbeq
ramp_new 1zziA_elvl, 1zziA_map,[-2,0,2]
set surface_color, 1zziA_elvl, 1zziA_pbeq
set surface_solvent, 1, 1zziA_pbeq
Now I want to fit my structure to some reference one using super or
align commands. As expected, the map no longer works, I cannot
re-generate the original coloring after fitting. I suppose that I need
to change the orientation of the map accordingly to the rotation of the
structure. But... how to do that? Is it at all possible?
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