From: Noel F. <noe...@me...> - 2006-05-19 01:12:06
Attachments:
noel.faux.vcf
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Hi all, I've just finished the development of two new plugins and a modified version of the PDB loader plugin (now with proxy support). A proxy configuration plugin and a nsSNP loader plugin. The proxy plugin stores in a pickled file whether the user connects directly to the web or through a proxy. If the connection is through a proxy, it stores the proxy url, port, user name and password (which at this time is not encrypted, any pointers as to how would be really appreciated). Is it possible to add this to pymol as a settings feature rather than a plugin? The snSNP loader allows the user to enter a SNP (rs) or a Swiss-Prot id and load the structural model from the large scale non-synonymous SNP database LS-SNP (http://alto.compbio.ucsf.edu/LS-SNP/) if one exists. If more than one nsSNP is present for the chosen protein, all nsSNPs are listed and the user is able to choose the nsSNP they wish to view. Once selected, the modeled struture is loaded and the nsSNP residue is zoomed in and selected. Please visit: http://vbc.med.monash.edu.au/~fauxn/pymol_plugin/plugin.html to download these plugins. Is there a general plugin website which I'm able to upload these plugins? All comments and bugs please send an e-mail. Cheers Noel |
From: Jerome P. <j.p...@pa...> - 2006-05-19 07:31:25
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Hi Noel, Le Vendredi 19 Mai 2006 03:11, Noel Faux a =E9crit=A0: > Hi all, > > I've just finished the development of two new plugins and a modified > version of the PDB loader plugin (now with proxy support). A proxy > configuration plugin and a nsSNP loader plugin. > > The proxy plugin stores in a pickled file whether the user connects > directly to the web or through a proxy. If the connection is through a > proxy, it stores the proxy url, port, user name and password (which at > this time is not encrypted, any pointers as to how would be really > appreciated). Is it possible to add this to pymol as a settings feature > rather than a plugin? > > The snSNP loader allows the user to enter a SNP (rs) or a Swiss-Prot id > and load the structural model from the large scale non-synonymous SNP > database LS-SNP (http://alto.compbio.ucsf.edu/LS-SNP/) if one exists. > If more than one nsSNP is present for the chosen protein, all nsSNPs are > listed and the user is able to choose the nsSNP they wish to view. Once > selected, the modeled struture is loaded and the nsSNP residue is zoomed > in and selected. These seem to be great tools ! I will try them quickly ! > Please visit: > http://vbc.med.monash.edu.au/~fauxn/pymol_plugin/plugin.html to download > these plugins. > > Is there a general plugin website which I'm able to upload these plugins? I don't think so. But you can add a link on the pymol wiki (there is Plugin= =20 directory). You can add a new category for swissprot plugin and use the pdb= =20 category for the first plugin. Regards, Jerome Pansanel > All comments and bugs please send an e-mail. > > Cheers > Noel |