Thanks Jerome!
It worked! I also checked out your website and your tutorial in French.
They're both great!
-Charlotte
>From: Jerome PANSANEL <j.p...@pa...>
>To: pym...@li...
>Subject: Re: [PyMOL] Selecting residues on surface only
>Date: Wed, 11 Jan 2006 17:26:55 +0100
>
>Hi,
>
>Le Mercredi 11 Janvier 2006 17:27, Charlotte Habegger-Polomat a =E9crit=A0:
>
>
>>Hello Pymol users!
>>
>>As a fairly unexperienced user of Pymol, I have not yet found a way to
>>select all residues in one of the cavities in my protein of interest.
>>When I render the protein as a surface, I can't select and visualize the
>>individual residues in the cleft.
>>
>>
>
>You can use the clipping planes when you want to explore the core of your=20
>protein (shift+right-button, move mouse up/down).
>Another way is to select your ligand inside your cavity, then select around
>(menu A -> around -> 6 A for your ligand selection) and then select S->=20
>surface.
>
>
>
>>When not rendered as a surface, I=20
>>can't seem to select only residues on the surface and not those buried
>>inside.
>>
>>Is there a straightforward way to do this (select and visualize the
>>residues on the (outside) surface of a cavity, with their labels)?
>>
>>
>
>I publish today a pre-release of a PyMOL tutorial in french :
>http://www.pansanel.net/chemistry/resources/PymolIntroduction.pdf
>
>You can take a look !
>
>Jerome Pansanel
>
>
>
>
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