From: Sebastien M. <seb...@ig...> - 2005-08-01 09:08:54
|
Hello, I try to add comment lines in my pml scripts but I don't know how to do. I tried #, /*, //, <!-- or <-- characters but everything fails. I got this kind of error messages: color red, 1DHS #color Selector-Error: Invalid Selection Name. ( 1DHS #color )<-- or color red, 1DHS <-- second essai --> Error: unrecognized keyword: <-- How can I use comments in PyMOL scripts ? Thanks I use PyMOL 0.98 on Linux OS. --=20 S=E9bastien Moretti http://www.igs.cnrs-mrs.fr/ CNRS - IGS 31 chemin Joseph Aiguier 13402 Marseille cedex |
From: <li...@ul...> - 2005-08-01 09:17:19
|
On Monday 01 August 2005 11:08, Sebastien Moretti wrote: > Hello, > I try to add comment lines in my pml scripts but I don't know how to do. > I tried #, /*, //, <!-- or <-- characters but everything fails. ... > How can I use comments in PyMOL scripts ? The hash character (#) works to include comments on separate lines, but not at the end of a line that contains commands. So you can do # Create separate dimer create dimer,(chain A,B) but not create dimer,(chain A,B) # Create separate dimer -- Lieven Buts Ultrastructure Laboratory Vrije Universiteit Brussel |
From: Ezequiel H P. <za...@pa...> - 2005-08-01 09:23:52
|
> I try to add comment lines in my pml scripts but I don't know how to do. > I tried #, /*, //, <!-- or <-- characters but everything fails. use '#' but on a line of its own not at the end of line containing a pymol command, like this: # color 1DHS in red color red, 1DHS |
From: Sebastien M. <seb...@ig...> - 2005-08-01 09:54:52
|
>> I try to add comment lines in my pml scripts but I don't know how to d= o. >> I tried #, /*, //, <!-- or <-- characters but everything fails. >=20 > use '#' but on a line of its own not at the end of > line containing a pymol command, like this: >=20 > # color 1DHS in red > color red, 1DHS '#' seems to be incorrect: #second essai Error: unrecognized keyword: #second delete AaA The script goes on but it sends an error message --=20 S=E9bastien Moretti http://www.igs.cnrs-mrs.fr/ CNRS - IGS 31 chemin Joseph Aiguier 13402 Marseille cedex |
From: Ezequiel H P. <za...@pa...> - 2005-08-01 10:54:40
|
> '#' seems to be incorrect: It is not incorrect. If you post your script and how you use it we might be able to help. Also, if you have something in you $HOME/.pymolrc or $HOME/.pymolrc.py you should try temporarily moving these files elsewhere and trying again. Something may have gone wrong in one of those files, it happened to me before. Zac |
From: Sebastien M. <seb...@ig...> - 2005-08-02 10:05:11
Attachments:
2HCKa_.p1m
|
>> '#' seems to be incorrect: >=20 > It is not incorrect. >=20 > If you post your script and how you use it we might be able to help. >=20 > Also, if you have something in you $HOME/.pymolrc or $HOME/.pymolrc.py > you should try temporarily moving these files elsewhere and trying agai= n. > Something may have gone wrong in one of those files, it happened to me=20 > before. >=20 > Zac I didn't properly test the '#' character. It works in the external GUI and in standard scripts like in pml files. But, '#' doesn't work in p1m file. Error: unrecognized keyword: #second The # line involves an error but the script goes on. I join an example where I removed the embedded lines with the structure=20 because the e-mail size was too large for the mailist server. --=20 S=E9bastien Moretti http://www.igs.cnrs-mrs.fr/ CNRS - IGS 31 chemin Joseph Aiguier 13402 Marseille cedex |
From: Ezequiel H P. <za...@pa...> - 2005-08-02 14:05:13
|
> But, '#' doesn't work in p1m file. > Error: unrecognized keyword: #second > The # line involves an error but the script goes on. I think indeed you found a bug with the parsing of p1m files. I have the same behaviour on my Linux computer. Nice choice of colors by the way. Cheers, Zac |