pymol-users

[PyMOL] removing loops

[Neil R. <n.a...@le...>]

Dear All,

I'm sure this is a really stupid question, but can you turn off the =
loops in
a "cartoon auto" representation, to leave (visually) disconnected =
helices
and strands?

I've tried "set cartoon_loop_radius, 0" which kind-of works but leaves
unfortunate ghosting artefacts in the image.

Any help would be much appreciated.

Cheers,

Neil.

=20

*************************************

Neil Ranson PhD

University Research Fellow,

Astbury Centre for Structural Molecular Biology,

School of Biochemistry & Microbiology,

University of Leeds,

Leeds, LS2 9JT. UK.

=20

Tel: +44 (0) 113 343 7065

Fax: +44 (0) 113 343 3167

n.a...@le...

=20

*************************************

=20

Re: [PyMOL] removing loops

[Uwe R. <uri...@je...>]

You could just specify a selection of residues for which you want to=20
display the cartoon if that's not
too much trouble.

e.g. 'show cartoon, i. 1:20' displays the cartoon for residues 1-20

I hope that's what you meant.

Uwe

Neil Ranson wrote:

> Dear All,
>
> I=92m sure this is a really stupid question, but can you turn off the=20
> loops in a =93cartoon auto=94 representation, to leave (visually)=20
> disconnected helices and strands?
>
> I=92ve tried =93set cartoon=5Floop=5Fradius, 0=94 which kind-of works but=
 leaves=20
> unfortunate ghosting artefacts in the image.
>
> Any help would be much appreciated.
>
> Cheers,
>
> Neil.
>
> *************************************
>
> Neil Ranson PhD
>
> University Research Fellow,
>
> Astbury Centre for Structural Molecular Biology,
>
> School of Biochemistry & Microbiology,
>
> University of Leeds,
>
> Leeds, LS2 9JT. UK.
>
> Tel: +44 (0) 113 343 7065
>
> Fax: +44 (0) 113 343 3167
>
> n.a...@le...
>
> *************************************
>

RE: [PyMOL] removing loops

[Warren D. <wa...@de...>]

hide cartoon, not ss H+S


--
Warren L. DeLano, Ph.D.                     
Principal Scientist

. DeLano Scientific LLC  
. 400 Oyster Point Blvd., Suite 213           
. South San Francisco, CA 94080 USA   
. Biz:(650)-872-0942  Tech:(650)-872-0834     
. Fax:(650)-872-0273  Cell:(650)-346-1154
. mailto:wa...@de...      
 

> -----Original Message-----
> From: pym...@li... 
> [mailto:pym...@li...] On Behalf Of 
> Neil Ranson
> Sent: Wednesday, May 25, 2005 7:15 AM
> To: pym...@li...
> Subject: [PyMOL] removing loops
> 
> Dear All,
> 
> I'm sure this is a really stupid question, but can you turn 
> off the loops in a "cartoon auto" representation, to leave 
> (visually) disconnected helices and strands?
> 
> I've tried "set cartoon_loop_radius, 0" which kind-of works 
> but leaves unfortunate ghosting artefacts in the image.
> 
> Any help would be much appreciated.
> 
> Cheers,
> 
> Neil.
> 
>  
> 
> *************************************
> 
> Neil Ranson PhD
> 
> University Research Fellow,
> 
> Astbury Centre for Structural Molecular Biology,
> 
> School of Biochemistry & Microbiology,
> 
> University of Leeds,
> 
> Leeds, LS2 9JT. UK.
> 
>  
> 
> Tel: +44 (0) 113 343 7065
> 
> Fax: +44 (0) 113 343 3167
> 
> n.a...@le...
> 
>  
> 
> *************************************
> 
>  
> 
>