pymol-users

[PyMOL] secondary structure again

[Marco F. <ma...@pr...>]

I have a problem to load secondary structure.

I read the previous mail and I do not have DSSP.

Any other way to load the secondary structure information into pymol?

thank you

marco

Re: [PyMOL] secondary structure again

[Kadmon <ka...@wa...>]

Dear Marco,
you can find DSSP at http://www.embl-heidelberg.de/dssp/ or could prefer use
Procheck from the CCP4 series (http://www.ccp4.ac.uk/) and run it on your
pdb file by the "procheck [pdbfile] [chain number] [resolution]" command.
You will obtain 10 postscript files in which you can find drawn in the 6th
one the secondary predicted structures that you can write in your helix and
sheets part in your pdb.

Hoping that it could help you

See ya

Virgile ADAM

Re: [PyMOL] secondary structure again

[Kadmon <ka...@wa...>]

I made a mistake giving the URL in my last post, the correct DSSP page is
now http://www.cmbi.kun.nl/gv/dssp/index.html
Sorry for this.

Virgile ADAM