From: Donnie B. <dbe...@ge...> - 2009-07-12 06:34:09
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Hi all, I'm trying to compare the B-factors in two homologous proteins I aligned using 'super'. I can create an alignment object mapping residue pairs together, so I think what I want to do should be possible. I'd like to somehow use that to map the *difference* between the two CA B's onto one of the structures, then color it by B-factor and color unaligned residues gray. I can't even figure out how to get at the alignment object or what's in it, much less how to do this. Could anyone help me? -- Thanks, Donnie Donnie Berkholz P. Andrew Karplus lab Oregon State University |