From: Yunfeng Hu <yu...@sc...> - 2004-10-19 23:03:26
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Thank you, Bruno and Tsjerk. I found both approaches work very well. Eric > Frankly, with Pymol, people don't as far as I know. What I usually do > is > determine for the first frame of the individual pdb files (obtained > with > trjconv -sep) the orientation, viewing point and appearance. This I > save > in a .pml script. Then with a bit of python code, looping over the > frames, calling them, processing the script, raytrace, write the image > and delete the object again. It's at present the best I can think of. > It > appears that Dino is capable of processing a gromacs trajectory and > outputting raytraced frames, but I haven't felt like starting at the > bottom of that learning curve... > > To help out a bit, the loop code could look like this: > > for i in range(nr_of_frames): > cmd.load('frame_' + repr(i) '.pdb', 'prot') > cmd.do('@script.pml') > cmd.delete('prot') > > Everything to go in script.pml could ofcourse also be explicitly given > in the loop... > > Hope it helps, > > Tsjerk |