From: <al...@la...> - 2003-09-09 19:49:14
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Hi List! I'm glad to see others enjoying MDK 9.1. But pymol rpm for RH is a friend of MDK, I suggest you use pymol-0_90-bin-linux-libc6-i386.tgz It works terrifically for me. Dear Warren, realy great job! If possible, a proper pymol rpm for MDK 9.1 would be very welcome, since = I believe there's many MDK users of pymol like me and Dan. Cheers, Alan Silvae On Tue, 9 Sep 2003, Warren L. DeLano wrote: > Dan, > > Opinions may vary, but I see RPMs are pretty heavily tied to t= he > distribution. The kind of errors you're seeing are to be expected whe= n > trying to install cross-distribution. > > RPM doesn't look at the file system (AFAIK), it looks in the R= PM > database for the names of (Redhat-specific) known dependency packages. > > You also need the Python megawidgets (pmw) -- there should be = an > RPM for this... > > How many other PyMOL users are using Mandrake? Perhaps there > are enough users to justify at least one official mdk package release? > > Cheers, > Warren ------------------------------------------------- This mail sent through IMP: http://horde.org/imp/ |
From: Dr. D. J. W. P. <da...@ch...> - 2003-09-10 07:58:07
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Warren , Are you aware of the python MMTK molecular dynamics package? AMBER force field and energy minimisation are there! Could this be easily interfaced with pymol? http://starship.python.net/crew/hinsen/MMTK/ I had a play with it but I don't really know what I am doing and need=20 to learn.... Dan On Tuesday, September 9, 2003, at 09:08 PM,=20 pym...@li... wrote: > > We'd all like to see a real forcefield in PyMOL, but no one has = written > the code yet. > > Cheers, > Warren Dr. Daniel James White BSc. (Hons.) PhD Cell Biology Department of biological and environmental science PO Box 35 University of Jyv=E4skyl=E4 Jyv=E4skyl=E4 FIN 40014 Finland +358 (0)14 260 4183 (work) +358 (0)414740463 (mob) http://www.chalkie.org.uk da...@ch... wh...@cc... |
From: D. J. A. <de...@ia...> - 2003-09-17 21:40:17
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On Wed, Sep 10, 2003 at 10:57:59AM +0300, Dr. Daniel James White PhD wrote: > Warren , > > Are you aware of the python MMTK molecular dynamics package? > AMBER force field and energy minimisation are there! > Could this be easily interfaced with pymol? > > http://starship.python.net/crew/hinsen/MMTK/ Probably, given messages to this list like this one, for instance: http://sourceforge.net/mailarchive/forum.php?thread_id=1419207&forum_id=60 --Joe -- D. Joe Anderson, Asst. Sci. 2252 Molecular Biology Bldg. BBMB Research Computing Support www.bb.iastate.edu/computing bbs...@ia... |
From: Daniel R. <dr...@li...> - 2003-09-10 12:51:52
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Hi Alan Thanks for the tip! Taking the tar route rather than the rpm one makes installation trivial on Mandrake 9.1. I'm even more impressed to see that PYMOL automatically detects both processors so rendering is just phenomenally fast. Cheers Dan On Tue, 2003-09-09 at 20:48, al...@la... wrote: > Hi List! > > I'm glad to see others enjoying MDK 9.1. > > But pymol rpm for RH is a friend of MDK, I suggest you use > pymol-0_90-bin-linux-libc6-i386.tgz > > It works terrifically for me. > > Dear Warren, realy great job! > If possible, a proper pymol rpm for MDK 9.1 would be very welcome, since I > believe there's many MDK users of pymol like me and Dan. > > Cheers, > > Alan Silvae > > On Tue, 9 Sep 2003, Warren L. DeLano wrote: > > > Dan, > > > > Opinions may vary, but I see RPMs are pretty heavily tied to the > > distribution. The kind of errors you're seeing are to be expected when > > trying to install cross-distribution. > > > > RPM doesn't look at the file system (AFAIK), it looks in the RPM > > database for the names of (Redhat-specific) known dependency packages. > > > > You also need the Python megawidgets (pmw) -- there should be an > > RPM for this... > > > > How many other PyMOL users are using Mandrake? Perhaps there > > are enough users to justify at least one official mdk package release? > > > > Cheers, > > Warren > > ------------------------------------------------- > This mail sent through IMP: http://horde.org/imp/ > > > ------------------------------------------------------- > This sf.net email is sponsored by:ThinkGeek > Welcome to geek heaven. > http://thinkgeek.com/sf > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users |
From: <al...@la...> - 2003-09-10 13:01:19
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Hi Dan! Thank you too... for decriphering what I tried to say. > > But pymol rpm for RH is *NOT* a friend of MDK, I suggest you use > > pymol-0_90-bin-linux-libc6-i386.tgz Pymol is quite awesome by itself, but running with proper hardware... Cheers, Alan Quoting Daniel Rigden <dr...@li...>: > Hi Alan >=20 > Thanks for the tip! Taking the tar route rather than the rpm one makes > installation trivial on Mandrake 9.1. I'm even more impressed to see > that PYMOL automatically detects both processors so rendering is just > phenomenally fast. >=20 > Cheers =20 > Dan ------------------------------------------------- This mail sent through IMP: http://horde.org/imp/ |