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From: David G. A. <da...@ar...> - 2002-09-10 12:55:02
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Hello to all, I would like to use DSSP secondary structure assignments but I don't know how to incorporate DSSP output in pdb format for PyMOL. I have found plenty of information arround but none about this issue. Can i get some help ? David --=20 David Aragao Linux User n=BA 237333 on http://counter.li.org/ "You will pay for your sins. If you have already paid, please disregard this message." |
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From: Gareth S. <ga...@eb...> - 2002-09-10 13:07:02
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David, Have a look at the rTools package on Kristian Rother's page http://www.rubor.de/bioinf/ (I haven't used this myself, and it appears to have some external dependencies - notably Java, but it may be what you want) Gareth On Tue, 2002-09-10 at 14:11, David Guerra Aragao wrote: > Hello to all, >=20 > I would like to use DSSP secondary structure assignments but I don't > know how to incorporate DSSP output in pdb format for PyMOL. >=20 > I have found plenty of information arround but none about this issue. >=20 > Can i get some help ? >=20 > David >=20 > --=20 > David Aragao > Linux User n=BA 237333 on http://counter.li.org/ > "You will pay for your sins. If you have already paid, please disregard > this message." >=20 >=20 >=20 >=20 >=20 > ------------------------------------------------------- > This sf.net email is sponsored by: OSDN - Tired of that same old > cell phone? Get a new here for FREE! > https://www.inphonic.com/r.asp?r_________________________________________= ______ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users --=20 ---------------------------------------------------------------------------= -- Gareth Stockwell EMBL - European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD =20 ga...@eb... Tel 01223 492548 Personal homepage: http://www.ebi.ac.uk/~gareth |
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From: David G. A. <da...@ar...> - 2002-09-12 14:59:27
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Dear all, Thanks to Gareth i solved my problem about SS prediction using rTools package. My Thanks to Kristian Rother also. I have another question: I need to produce a 3000x2400 pixel image (for 300dpi with 10x8 inches). It seams I can only save a picture with the screen size. For example I have 1600x1400 desktop size so the maximum picture that can be save it's that ? Can't I save picture bigger ? Thanks in advance for any help, David =20 On Tue, 2002-09-10 at 14:48, Gareth Stockwell wrote: > David, >=20 > Have a look at the rTools package on Kristian Rother's page >=20 > http://www.rubor.de/bioinf/ >=20 > (I haven't used this myself, and it appears to have some external > dependencies - notably Java, but it may be what you want) >=20 > Gareth >=20 >=20 > On Tue, 2002-09-10 at 14:11, David Guerra Aragao wrote: > > Hello to all, > >=20 > > I would like to use DSSP secondary structure assignments but I don't > > know how to incorporate DSSP output in pdb format for PyMOL. > >=20 > > I have found plenty of information arround but none about this issue. > >=20 > > Can i get some help ? > >=20 > > David > >=20 > > --=20 > > David Aragao > > Linux User n=BA 237333 on http://counter.li.org/ > > "You will pay for your sins. If you have already paid, please disregar= d > > this message." > >=20 > >=20 > >=20 > >=20 > >=20 > > ------------------------------------------------------- > > This sf.net email is sponsored by: OSDN - Tired of that same old > > cell phone? Get a new here for FREE! > > https://www.inphonic.com/r.asp?r_______________________________________= ________ > > PyMOL-users mailing list > > PyM...@li... > > https://lists.sourceforge.net/lists/listinfo/pymol-users > --=20 > -------------------------------------------------------------------------= ---- > Gareth Stockwell > EMBL - European Bioinformatics Institute > Wellcome Trust Genome Campus > Hinxton > Cambridge CB10 1SD =20 > ga...@eb... > Tel 01223 492548 Personal homepage: > http://www.ebi.ac.uk/~gareth >=20 >=20 >=20 >=20 > ------------------------------------------------------- > This sf.net email is sponsored by: OSDN - Tired of that same old > cell phone? Get a new here for FREE! > https://www.inphonic.com/r.asp?r=3Dsourceforge1&refcode1=3Dvs3390 > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users |
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From: Ben C. <ac...@em...> - 2002-09-12 15:13:21
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David, Type 'help ray'. What you want is 'ray 3000,2400', followed by 'png foo.png'. Regards, Ben On Thursday, September 12, 2002, at 11:01 AM, David Guerra Aragao wrote: > Dear all, > > Thanks to Gareth i solved my problem about SS prediction using rTools > package. My Thanks to Kristian Rother also. > > I have another question: > > I need to produce a 3000x2400 pixel image (for 300dpi with 10x8 =20 > inches). > It seams I can only save a picture with the screen size. For example I > have 1600x1400 desktop size so the maximum picture that can be save =20= > it's > that ? Can't I save picture bigger ? > > Thanks in advance for any help, > > David > > On Tue, 2002-09-10 at 14:48, Gareth Stockwell wrote: >> David, >> >> Have a look at the rTools package on Kristian Rother's page >> >> http://www.rubor.de/bioinf/ >> >> (I haven't used this myself, and it appears to have some external >> dependencies - notably Java, but it may be what you want) >> >> Gareth >> >> >> On Tue, 2002-09-10 at 14:11, David Guerra Aragao wrote: >>> Hello to all, >>> >>> I would like to use DSSP secondary structure assignments but I don't >>> know how to incorporate DSSP output in pdb format for PyMOL. >>> >>> I have found plenty of information arround but none about this = issue. >>> >>> Can i get some help ? >>> >>> David >>> >>> -- =20 >>> David Aragao >>> Linux User n=BA 237333 on http://counter.li.org/ >>> "You will pay for your sins. If you have already paid, please =20 >>> disregard >>> this message." >>> >>> >>> >>> >>> >>> ------------------------------------------------------- >>> This sf.net email is sponsored by: OSDN - Tired of that same old >>> cell phone? Get a new here for FREE! >>> https://www.inphonic.com/=20 >>> r.asp?r_______________________________________________ >>> PyMOL-users mailing list >>> PyM...@li... >>> https://lists.sourceforge.net/lists/listinfo/pymol-users >> --=20 >> = ----------------------------------------------------------------------=20= >> ------- >> Gareth Stockwell >> EMBL - European Bioinformatics Institute >> Wellcome Trust Genome Campus >> Hinxton >> Cambridge CB10 1SD >> ga...@eb... >> Tel 01223 492548 Personal homepage: >> http://www.ebi.ac.uk/~gareth >> >> >> >> >> ------------------------------------------------------- >> This sf.net email is sponsored by: OSDN - Tired of that same old >> cell phone? Get a new here for FREE! >> https://www.inphonic.com/r.asp?r=3Dsourceforge1&refcode1=3Dvs3390 >> _______________________________________________ >> PyMOL-users mailing list >> PyM...@li... >> https://lists.sourceforge.net/lists/listinfo/pymol-users > > > > > ------------------------------------------------------- > This sf.net email is sponsored by:ThinkGeek > Welcome to geek heaven. > http://thinkgeek.com/sf > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users |
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