From: Warren D. <wa...@de...> - 2006-05-08 17:56:02
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Hi Pierre, Take a look at some of the wizard code (pymol/modules/pymol/wizard/*.py) = for examples on how to capture and respond to selection "events" in the = 3D viewer. Cheers, Warren -- Warren L. DeLano, Ph.D. =20 Principal Scientist . DeLano Scientific LLC =20 . 400 Oyster Point Blvd., Suite 213 =20 . South San Francisco, CA 94080 USA =20 . Biz:(650)-872-0942 Tech:(650)-872-0834 =20 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:wa...@de... =20 =20 > -----Original Message----- > From: pym...@li...=20 > [mailto:pym...@li...] On Behalf Of=20 > pierre mazet > Sent: Thursday, April 27, 2006 5:37 AM > To: pym...@li... > Subject: [PyMOL] how link Pymol to an other program >=20 > Hi everybody, > I'm working on multiple sequence alignments and I'm looking=20 > for co-evolving residues (positions/columns in the alignment).=20 > I performed a statistical analysis (clustering) and obtain a=20 > tree in which leaves are positions. I use a tree viewer=20 > (written in tcl/tk) to manipulate the tree, and i'd like to=20 > link this tree viewer to PyMOL in order to be able to select=20 > residues or cluster of residues in the tree and color them in=20 > the pdb structure displayed in Pymol.=20 > In the PyMOL user manual, it's said that to link PyMOL with=20 > an other program, we have to use a separate external GUI=20 > window to control the interaction, rather than changing=20 > internal PyMOL code. > Is someone could tell me more about this idea? how can this work ? > Thanks in advance! > =20 > pierre. >=20 |