From: Warren D. <wa...@de...> - 2005-11-21 19:48:42
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FYI: In the development code, I've added a new "segi" option to "symexp" that will automatically assign a unique segment ID to symmetry-generated molecules. This will allow a use case such as follows: % pymol load $PYMOL_PATH/test/dat/1tii.pdb symexp s, 1tii, 1tii, 20.0, segi=3D1 save packing.pdb, all quit % pymol packing.pdb Cheers, Warren -- Warren L. DeLano, Ph.D. =20 Principal Scientist . DeLano Scientific LLC =20 . 400 Oyster Point Blvd., Suite 213 =20 . South San Francisco, CA 94080 USA =20 . Biz:(650)-872-0942 Tech:(650)-872-0834 =20 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:wa...@de... =20 =20 > -----Original Message----- > From: pym...@li...=20 > [mailto:pym...@li...] On Behalf Of=20 > Peter Adrian Meyer > Sent: Monday, November 21, 2005 11:45 AM > To: kosa > Cc: pym...@li... > Subject: Re: [PyMOL] saving multiple object in one pdb file >=20 >=20 >=20 > > My question is: how to save multiple objects from pymol as one nice=20 > > pdb file, for instance with each object with different chain name? >=20 > alter SymgenObject,chain 'X' >=20 > and repeat as needed for all objects (changing the chain as=20 > needed). Then use all of your objects as the selection for=20 > save (aka save > AllObjects.pdb,(original,sym1,sym2) ) >=20 > Pete >=20 > Pete Meyer > Fu Lab > BMCB grad student > Cornell University >=20 >=20 >=20 > ------------------------------------------------------- > This SF.Net email is sponsored by the JBoss Inc. Get=20 > Certified Today Register for a JBoss Training Course. Free=20 > Certification Exam for All Training Attendees Through End of=20 > 2005. For more info visit: > http://ads.osdn.com/?ad_id=3D7628&alloc_id=3D16845&op=3Dclick > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users >=20 >=20 >=20 >=20 |