From: Tina L. <th...@bi...> - 2003-08-27 16:34:46
|
Hello, So I figured that in my $PYMOL_PATH\build\lib.win32-2.2\pymol, there is a _cmd.pyd that's missing in $PYMOL_PATH\modules\pymol. I copied it over, and PyMOL started up, but said that it failed to import the xray module, which however exists in $PYMOL_PATH\modules\pymol, so I don't understand why it doesn't import that. Anyways, it seems to be up. I guess every time I build PyMOL, I'll have to copy the _cmd.pyd file over. Tina ----- Original Message ----- | From: "Tina Li" <th...@bi...> | To: <pym...@li...> | Date: Mon, 25 Aug 2003 11:57:27 -0400 | Subject: [PyMOL] cannot find _cmd module | | Hello, | | Eh, I think this is a rather basic question. So I built PyMOL on Win32, tried | to run pymol.bat, which calls python $PYMOL_PATH/modules/pymol/__init__.py, | which complained: | | Traceback (most recent call last): | File "D:\thli\root\misc\pymol-0.90\modules\pymol\__init__.py", line 92, in ? | import pymol | File "D:\thli\root\misc\pymol-0.90\modules\pymol\__init__.py", line 300, in | ? | import _cmd | ImportError: No module named _cmd | | I have PYTHONPATH set to $PYMOL_PATH/modules. Is it something obvious I'm | missing? | | Thanks much! | | Tina |
From: Warren L. D. <wa...@de...> - 2003-08-27 18:32:45
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Tina, Did you do a full installation? After running: python setup.py build install python setup2.py (in that order) pymol.bat should just work. There shouldn't be any need to copy anything over, nor should you set PYMOL_PATH -- that is all taken care of automatically with this approach. Cheers, Warren -- mailto:wa...@de... Warren L. DeLano, Ph.D. Principal Scientist DeLano Scientific LLC Voice (650)-346-1154 Fax (650)-593-4020 > -----Original Message----- > From: pym...@li... [mailto:pymol-users- > ad...@li...] On Behalf Of Tina Li > Sent: Wednesday, August 27, 2003 8:34 AM > To: pym...@li... > Subject: [PyMOL] Re: cannot find _cmd module > > Hello, > > So I figured that in my $PYMOL_PATH\build\lib.win32-2.2\pymol, there is a > _cmd.pyd that's missing in $PYMOL_PATH\modules\pymol. I copied it over, > and > PyMOL started up, but said that it failed to import the xray module, which > however exists in $PYMOL_PATH\modules\pymol, so I don't understand why it > doesn't import that. Anyways, it seems to be up. I guess every time I > build > PyMOL, I'll have to copy the _cmd.pyd file over. > > Tina > > ----- Original Message ----- > | From: "Tina Li" <th...@bi...> > | To: <pym...@li...> > | Date: Mon, 25 Aug 2003 11:57:27 -0400 > | Subject: [PyMOL] cannot find _cmd module > | > | Hello, > | > | Eh, I think this is a rather basic question. So I built PyMOL on Win32, > tried > | to run pymol.bat, which calls python > $PYMOL_PATH/modules/pymol/__init__.py, > | which complained: > | > | Traceback (most recent call last): > | File "D:\thli\root\misc\pymol-0.90\modules\pymol\__init__.py", line > 92, in > ? > | import pymol > | File "D:\thli\root\misc\pymol-0.90\modules\pymol\__init__.py", line > 300, > in > | ? > | import _cmd > | ImportError: No module named _cmd > | > | I have PYTHONPATH set to $PYMOL_PATH/modules. Is it something obvious > I'm > | missing? > | > | Thanks much! > | > | Tina > > > > > ------------------------------------------------------- > This sf.net email is sponsored by:ThinkGeek > Welcome to geek heaven. > http://thinkgeek.com/sf > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users |
From: Tina L. <th...@bi...> - 2003-08-27 19:32:47
|
Hello, Ah, I see why now. I did do a full installation, during which the _cmd and sglite extension files, etc. were copied to C:\Python22\Lib\site-packages\pymol. According to comment in C:\Python22\Lib\site.py, a path configuration file must exist in the \site-packages directory indicating which sub-directories are to be appended to sys.path. So I added a file, pymol.pth in \site-packages that contains: # pymol package configuration pymol Now Python knows where to look for modules. And it works. Thanks so much! Tina ----- Original Message ----- From: "Warren L. DeLano" <wa...@de...> To: "'Tina Li'" <th...@bi...>; <pym...@li...> Sent: Wednesday, August 27, 2003 2:32 PM Subject: RE: [PyMOL] Re: cannot find _cmd module | Tina, | | Did you do a full installation? After running: | | python setup.py build install | python setup2.py | | (in that order) | | pymol.bat should just work. There shouldn't be any need to copy | anything over, nor should you set PYMOL_PATH -- that is all taken care | of automatically with this approach. | | Cheers, | Warren | | | -- | mailto:wa...@de... | Warren L. DeLano, Ph.D. | Principal Scientist | DeLano Scientific LLC | Voice (650)-346-1154 | Fax (650)-593-4020 | | > -----Original Message----- | > From: pym...@li... [mailto:pymol-users- | > ad...@li...] On Behalf Of Tina Li | > Sent: Wednesday, August 27, 2003 8:34 AM | > To: pym...@li... | > Subject: [PyMOL] Re: cannot find _cmd module | > | > Hello, | > | > So I figured that in my $PYMOL_PATH\build\lib.win32-2.2\pymol, there | is a | > _cmd.pyd that's missing in $PYMOL_PATH\modules\pymol. I copied it | over, | > and | > PyMOL started up, but said that it failed to import the xray module, | which | > however exists in $PYMOL_PATH\modules\pymol, so I don't understand why | it | > doesn't import that. Anyways, it seems to be up. I guess every time I | > build | > PyMOL, I'll have to copy the _cmd.pyd file over. | > | > Tina | > | > ----- Original Message ----- | > | From: "Tina Li" <th...@bi...> | > | To: <pym...@li...> | > | Date: Mon, 25 Aug 2003 11:57:27 -0400 | > | Subject: [PyMOL] cannot find _cmd module | > | | > | Hello, | > | | > | Eh, I think this is a rather basic question. So I built PyMOL on | Win32, | > tried | > | to run pymol.bat, which calls python | > $PYMOL_PATH/modules/pymol/__init__.py, | > | which complained: | > | | > | Traceback (most recent call last): | > | File "D:\thli\root\misc\pymol-0.90\modules\pymol\__init__.py", | line | > 92, in | > ? | > | import pymol | > | File "D:\thli\root\misc\pymol-0.90\modules\pymol\__init__.py", | line | > 300, | > in | > | ? | > | import _cmd | > | ImportError: No module named _cmd | > | | > | I have PYTHONPATH set to $PYMOL_PATH/modules. Is it something | obvious | > I'm | > | missing? | > | | > | Thanks much! | > | | > | Tina | > | > | > | > | > ------------------------------------------------------- | > This sf.net email is sponsored by:ThinkGeek | > Welcome to geek heaven. | > http://thinkgeek.com/sf | > _______________________________________________ | > PyMOL-users mailing list | > PyM...@li... | > https://lists.sourceforge.net/lists/listinfo/pymol-users | |