From: Lukáš P. <xp...@nc...> - 2014-03-12 09:31:48
|
Dear PyMOL users, I'm wondering about coloring CGO objects in PyMOL. In the recent version 1.7. If ALPHA is specified for a cgo object, all the colors are neglected. In version 1.6 and previous everything works just fine. Is this a bug, an intension or am I missing a point somewhere? Let's take a following piece of code. It provides correct colorful triangle, only in the case 'ALPHA' line is omitted for version of PyMOL 1.7+ (I'm running Windows). data = [ BEGIN,TRIANGLES, ALPHA,1.0, COLOR,1.00,0.30,0.30, NORMAL,-0.997,-0.057,-0.051, VERTEX,52.083,62.446,50.739, COLOR,0.6,0.60,0.10, NORMAL,-0.999,-0.009,-0.044, VERTEX,52.048,63.219,50.739, COLOR,1.000,0.567,0.567, NORMAL,-0.998,-0.059,0.024, VERTEX,52.076,62.446,51.498, COLOR,0.600,0.2,0.2, END ] cmd.load_cgo(data,'triangle') Thank you for your answer Lukas |
From: Thomas H. <tho...@sc...> - 2014-03-12 18:10:40
|
Hi Lukas, this was a bug which is fixed in SVN revision 4072. Cheers, Thomas On 12 Mar 2014, at 05:07, Lukáš Pravda <xp...@nc...> wrote: > Dear PyMOL users, > > I’m wondering about coloring CGO objects in PyMOL. In the recent version 1.7. If ALPHA is specified for a cgo object, all the colors are neglected. In version 1.6 and previous everything works just fine. Is this a bug, an intension or am I missing a point somewhere? Let’s take a following piece of code. It provides correct colorful triangle, only in the case ‘ALPHA’ line is omitted for version of PyMOL 1.7+ (I’m running Windows). > > data = [ > BEGIN,TRIANGLES, > ALPHA,1.0, > COLOR,1.00,0.30,0.30, > NORMAL,-0.997,-0.057,-0.051, > VERTEX,52.083,62.446,50.739, > COLOR,0.6,0.60,0.10, > NORMAL,-0.999,-0.009,-0.044, > VERTEX,52.048,63.219,50.739, > COLOR,1.000,0.567,0.567, > NORMAL,-0.998,-0.059,0.024, > VERTEX,52.076,62.446,51.498, > COLOR,0.600,0.2,0.2, > END > ] > cmd.load_cgo(data,'triangle') > > Thank you for your answer > > Lukas -- Thomas Holder PyMOL Developer Schrödinger, Inc. |