pymol-users

[PyMOL] show spheres

[Tom L. <to...@ms...>]

Hi,

I have iron atoms in the ligand.  When I ask PyMol to show spheres of =
the ligand, the iron atoms don't show up.  Is it because the radius for =
iron hasn't been defined?  If so, how can I define it?

Tom Lee

Re: [PyMOL] show spheres

[Warren L. D. <wa...@su...>]

> I have iron atoms in the ligand.  When I ask PyMol to show spheres of the ligand, the iron atoms don't show up.  Is it because the radius for iron hasn't been defined?  If so, how can I define it?

Whoops...PyMOL has a goofed up value for Fe.  For now,

load yourfile.pdb
alter (elem Fe),vdw=1.8
rebuild

show sph