pymol-users

[PyMOL] Question on Mutagenesis

[Rainbow M. <rai...@ho...>]

Hello all,

      I'm a new user, and would like to learn how to use the mutagenesis 
wizard. However, i'm not sure how to manipulate it exactly.

      after i've loaded a pdb file, do I select a particular residue, and 
then use the menu on the right hand side to change this residue to the 
residue that i click on this menu?

      Please enlighten me on the steps and thank you very much.

Regards,
rainbow

_________________________________________________________________
Keep track of your Singapore stock prices. http://www.msn.com.sg/money/

RE: [PyMOL] Question on Mutagenesis

[Warren L. D. <wa...@de...>]

Rainbow,

	It's pretty simple:  After activating the mutagenesis wizard,
(1) CTRL-middle click on a residue of interest in your protein, (2)
select the new residue type in the blue pop-up menu, (3) use the arrow
keys to toggle through conformations, and then (4) click the apply
button.  

Cheers,
Warren

--
mailto:wa...@de...
Warren L. DeLano, Ph.D. 
Principal
DeLano Scientific LLC
Voice (650)-346-1154 
Fax   (650)-593-4020
 

-----Original Message-----
From: pym...@li...
[mailto:pym...@li...] On Behalf Of Rainbow
Mok
Sent: Wednesday, May 07, 2003 12:12 AM
To: pym...@li...
Subject: [PyMOL] Question on Mutagenesis

Hello all,

      I'm a new user, and would like to learn how to use the mutagenesis

wizard. However, i'm not sure how to manipulate it exactly.

      after i've loaded a pdb file, do I select a particular residue,
and 
then use the menu on the right hand side to change this residue to the 
residue that i click on this menu?

      Please enlighten me on the steps and thank you very much.

Regards,
rainbow

_________________________________________________________________
Keep track of your Singapore stock prices. http://www.msn.com.sg/money/



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[PyMOL] simple suggestion

[Nukri S. <rsa...@an...>]

Dear pymolists,

I though it could be a good idea to include the default values in the
responses to set commands. For example, when one does set reflect_power,2
and the software responds "Setting: reflect_power set to 2.00000", it
could say "Setting: reflect_power set to 2.00000 (default 1.00000). Or
even "Setting: reflect_power set from 0.50000 to 2.00000, (default
1.00000)",  It would make life lot easier when one plays around for the
best (desired) visual effects.
Cheers,
Nukri

Ruslan Sanishvili (Nukri) Ph.D.
GM/CA-CAT, APS
Argonne National Laboratory
9700 S. Cass Ave.
Argonne, IL 60439

Tel (630)252-0665
Fax (630)252-0667

rsa...@an...