RE: [PyMOL] saving images
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From: Greg C <gregc127@ho...> - 2004-09-14 06:35:58
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<html><div style='background-color:'><P>Thanks Scott. I have tried sticks (and it works) but it doesn't look very good for what I'm trying to show. The really annoying part about this lines issue is that it doesn't ALWAYS happen. And i can't seem to find any relation between the times it does save the lines versus the times it doesn't save the lines.<BR><BR>THanks again</P> <P>-GC<BR></P> <DIV> <P><IMG height=2 src="http://graphics.hotmail.com/greypixel.gif"; width="100%" vspace=9><FONT face="Verdana, Geneva, Arial, Sans-serif">Greg Caputo<STRONG> </STRONG>Ph.D. <IMG height=19 src="http://graphics.hotmail.com/i.p.embeer.gif"; width=19></FONT></P> <P><FONT face="Verdana, Geneva, Arial, Sans-serif">Postdoctoral Research Associate </FONT></P> <P><FONT face="Verdana, Geneva, Arial, Sans-serif">Department of Medical Biochemistry & Genetics </FONT></P> <P><FONT face="Verdana, Geneva, Arial, Sans-serif">Texas A&M University </FONT></P> <P><FONT face="Verdana, Geneva, Arial, Sans-serif">College Station, TX 77840</FONT></P> <P><FONT face="Verdana, Geneva, Arial, Sans-serif">(979) 862 3188 (lab)</FONT></P> <P><FONT face=Verdana>(979) 324 8645 (cell)</FONT></P> <P><IMG height=2 src="http://graphics.hotmail.com/greypixel.gif"; width="100%" vspace=9></P></DIV>>From: Scott Classen <classen@...> >To: pymol-users@... >Subject: [PyMOL] saving images >Date: Mon, 13 Sep 2004 09:38:45 -0700 > >Hi Greg, >You might need to display your sidechains as sticks rather than >lines in order for them to be visible when you write out your image >file. Or perhaps, if you are not already doing it, you should >raytrace your scene by hitting the "ray" button before you write out >your image file. >Scott > >On Sep 13, 2004, at 8:03 AM, Greg C wrote: > >>Hello all, >> >>I'm having a problem saving the pymol output as an image. I'm >>working with asingle alpha helix (~25 residues) with the residues >>displayed as lines, the backbone as a ribbon, and one or more of >>the residues as spheres. When i go to save the image, the lines >>are no longer present in the image, but still there in the pymol >>window. I should also note it's not a consistent problem. This >>happens about 60% of the time i try to save these >>images. Sometimes if i re-save the picture, it works. >> >>ANy ideas? >> >>Thanks >>-GC >> >~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Scott Classen, Ph.D. > ACS Postdoctoral Fellow > Department of Molecular & Cell Biology > University of California, Berkeley > 237 Hildebrand Hall #3206 > Berkeley, CA 94720-3206 > LAB 510.643.9491 > FAX 510.643.9290 >~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > > >------------------------------------------------------- >This SF.Net email is sponsored by: YOU BE THE JUDGE. Be one of 170 >Project Admins to receive an Apple iPod Mini FREE for your judgement >on >who ports your project to Linux PPC the best. Sponsored by IBM. >Deadline: Sept. 13. Go here: http://sf.net/ppc_contest.php >_______________________________________________ >PyMOL-users mailing list >PyMOL-users@... >https://lists.sourceforge.net/lists/listinfo/pymol-users </div><br clear=all><hr> <a href="http://g.msn.com/8HMBENUS/2728??PS=47575">Express yourself instantly with MSN Messenger! Download today - it's FREE!</a> </html> |
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