RE: [PyMOL] Cartoons from ca co-ordinates only

[Warren D. <wa...@de...>]

Hi M=E1ire,

	PyMOL requires the other mainchain atoms to be present in order to
generate a nice cartoon representation.  The only exception to this is =
if
you're willing to work with a simple tube, in which case you can enable =
the
cartoon_trace setting ("set cartoon_trace,on"), followed by "cartoon =
loop"
or "cartoon tube".

	Unfortunately, there is no good workaround to this at present...

Cheers,
Warren


--
mailto:wa...@de...
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154=20
Fax   (650)-593-4020
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> -----Original Message-----
> From: pym...@li...=20
> [mailto:pym...@li...] On Behalf Of=20
> mai...@gs...
> Sent: Thursday, May 27, 2004 9:06 AM
> To: pym...@li...
> Subject: [PyMOL] Cartoons from ca co-ordinates only
>=20
> Hi,
> I'm trying to create a movie showing mainchain and sidechain=20
> movements between two different states of a protein.
> I've generated the intermediate files, but they contain only=20
> the ca positions and not the other mainchain atom positions=20
> of the residues which are moving.
> I've specified the ss, but can not get a cartoon=20
> representation in pymol.
> Is not having the n, c and o the problem and is there a work round?
>=20
> M=E1ire Convery
> Protein Structure Section
> Computational and Structural Sciences
> Stevenage
>=20
>=20
>=20
>=20
>=20
>=20
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