[PyMOL] Re: split_states

[Dr. D. J. W. P. <da...@ch...>]

Warren,

Exactly what I needed!

cheers

Dan


On 5 Apr 2004, at 23:08, pym...@li...=20
wrote:

> Message: 10
> From: "Warren DeLano" <wa...@de...>
> To: "'Todd Geders'" <ge...@pu...>,
> 	"'Ann Mullin'" <am...@tu...>
> Cc: <pym...@li...>
> Subject: RE: [PyMOL] biological unit question
> Date: Mon, 5 Apr 2004 13:07:13 -0700
>
> Todd,
>
> Try MacPyMOL for the full PYMOL effect.  http://delsci.com/macpymol
>
> There is also a new command in the 0.95 series:
>
>    split_states object-name
>
> which will spread a PDB "biological unit" (or any multi-state object =
--
> including SD files) over a series of independent objects.  This makes=20=

> it
> possible to interact with such objects more naturally than with=20
> "all_states
> =3D 1".
>
>    load 1c8e.pdb1, 1c8e
>    split_states 1c8e
>    delete 1c8e
>    zoom
>    spectrum b
>    hide lines
>    set cartoon_sampling,3
>    show cartoon
>    bg_color grey70
>    set hash_max, 150
>    ray
> ...
>    orient
>    zoom complete=3D1
>    ray
>
> image & screen-shot at:
>
>   http://delsci.com/img/1c8e.jpg
>   http://delsci.com/img/1c8e-screen.jpg
>
> Note that looking at large systems such as this (255300 atoms) may=20
> take some
> extra RAM -- 1.5 GB is recommended for this task, and it still takes a=20=

> dual
> 2 Ghz G5 85 seconds to render...
>
> Cheers,
> Warren
>
>
Dr. Daniel James White BSc. (Hons.) PhD
Cell Biology
Department of biological and environmental science
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University of Jyv=E4skyl=E4
Jyv=E4skyl=E4 FIN 40014
Finland
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