FW: [PyMOL] selecting multiple atoms ie oxygen

[David A. H. <dh...@wf...>]

Warren,
Personally, I'd much rather have wild-card selections in atom names and =
have to deal individually with the ill-conceived PDB files than the =
other way around.
Regards,
David Horita

-----Original Message-----
From: pym...@li... =
[mailto:pym...@li...] On Behalf Of Warren =
DeLano
Sent: Wednesday, February 18, 2004 10:56 AM
To: 'John Berrisford'; pym...@li...
Subject: RE: [PyMOL] selecting multiple atoms ie oxygen


John,
=20
   color red, 5paa and elem o

The problem with using asterices as wildcards in atom names is that some =
ill-conceived PDB files actually use them in atom names.=20

However, PyMOL does support the use of a terminal wildcard in some =
cases, such as with the delete command...

create obj01, none
create obj02, none
delete obj*

And with residue names

color red, as*
color blue, gl*
color pink, hi*

Cheers,
Warren


> -----Original Message-----
> From: pym...@li...
> [mailto:pym...@li...] On Behalf Of=20
> John Berrisford
> Sent: Wednesday, February 18, 2004 3:42 AM
> To: pym...@li...
> Subject: [PyMOL] selecting multiple atoms ie oxygen
>=20
> I wish to select multiple oxygens (labelled O1, O2 etc..
> within my pdb file) and colour them red for example. Is there=20
> any easy way of doing this other than typing out a list of=20
> all the oxygens I wish to select?
>=20
> eg. color red, (5paa and (name o1+o1a+o2+o3+o4+o5+o1p+o2p+o3p))
>=20
> I know in molscript its posible to use a o* label to select
> all oxygens, is such a switch possible in pymol. It doesn't=20
> work, or I am using the wrong syntax if its possible.
>=20
> Any thoughts would be appreciated.
>=20
> John
>=20
>=20
> -------------------------------------------------------
> SF.Net is sponsored by: Speed Start Your Linux Apps Now. Build and=20
> deploy apps & Web services for Linux with a free DVD software kit from =

> IBM. Click Now! =
http://ads.osdn.com/?ad_id=3D1356&alloc_id=3D3438&op=3Dclick
> _______________________________________________
> PyMOL-users mailing list
> PyM...@li...
> https://lists.sourceforge.net/lists/listinfo/pymol-users
>=20




-------------------------------------------------------
SF.Net is sponsored by: Speed Start Your Linux Apps Now.
Build and deploy apps & Web services for Linux with
a free DVD software kit from IBM. Click Now!
http://ads.osdn.com/?ad_id=3D1356&alloc_id=3D3438&op=3Dclick
_______________________________________________
PyMOL-users mailing list
PyM...@li...
https://lists.sourceforge.net/lists/listinfo/pymol-users