RE: [PyMOL] homologous alignments?

[Warren L. D. <wa...@de...>]

Camille,

	If I understand your question, you're looking for the setting
which creates a discrete color transition at the edges of helices and
strands, instead of blending.  It is:

set cartoon_discrete_colors, on

For example

color grey, name ca
color yellow, ss s and name ca
color red, ss h and name ca
set cartoon_discrete_colors, on

Cheers,
Warren

--
mailto:wa...@de...
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154 
Fax   (650)-593-4020

> -----Original Message-----
> From: pym...@li... [mailto:pymol-users- 
> ad...@li...] On Behalf Of ca...@mr...
> Sent: Monday, January 19, 2004 7:37 AM
> To: Warren L. DeLano
> Cc: 'Michael Bovee'; pym...@li...
> Subject: Re: [PyMOL] homologous alignments?
> 
> Hello,
> 	 I am unable to read the archive at the moment.... so can anyone
tell
> me the command that allows colouring of the edge of helices and
strands
> (usually grey). I think this was posted recently but I don't have it
in
> any of my saved scripts.
> 
> Many thanks,
> 	Camille
> 
> Dr Camille Shammas
> Medical Research Council Laboratory of Molecular Biology Hills Road, 
> Cambridge CB2 2QH, UK.
> Tel: +44 (0)1223 402407
> Mobile: 07812035842
> E-mail: ca...@mr...
> 
> 
> 
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