From: Scott C. <cl...@uc...> - 2003-11-04 20:43:02
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Hello FINK community, I have been unable to compile pymol 0.90-2. I copied pymol.info and pymol.patch from /sw/fink/10.2/unstable/main/finkinfo/sci/ to /sw/fink/10.3/local/main/finkinfo/ and ran fink install pymol I was told to sudo gcc_select 3 I reran fink install pymol Here is the last few lines on the terminal. Any help would be greatly appreciated. cc -I../layer0 -I../layer1 -I../layer2 -I../layer3 -I../layer4 -I../layer5 -ffast-math -no-cpp-precomp -ansi -Wmissing-prototypes -O3 -funroll-loops -fomit-frame-pointer -I/sw/include -I/sw/includ hon2.2 -I/sw/include/python2.2/Numeric -I/usr/X11R6/include -D_HAVE_LIBPNG -D_PYMOL_MODULE -D_PYMOL_NUMPY -I/sw/include -c -o Block.o Block.c In file included from /usr/include/libkern/OSByteOrder.h:35, from /usr/include/mach/ndr.h:93, from /usr/include/mach/clock_priv.h:7, from /usr/include/mach/mach_interface.h:37, from /usr/include/mach/mach.h:62, from /usr/include/sys/event.h:154, from /usr/include/sys/select.h:71, from /sw/include/python2.2/pyport.h:119, from /sw/include/python2.2/Python.h:62, from ../layer0/os_python.h:23, from ../layer5/main.h:19, from Block.c:20: /usr/include/libkern/ppc/OSByteOrder.h:42: syntax error before "uint16_t" /usr/include/libkern/ppc/OSByteOrder.h:57: syntax error before "uint32_t" /usr/include/libkern/ppc/OSByteOrder.h:72: syntax error before "uint64_t" /usr/include/libkern/ppc/OSByteOrder.h:93: syntax error before "void" /usr/include/libkern/ppc/OSByteOrder.h:107: syntax error before "void" /usr/include/libkern/ppc/OSByteOrder.h:121: syntax error before "void" /usr/include/libkern/ppc/OSByteOrder.h:143: syntax error before "uint16_t" /usr/include/libkern/ppc/OSByteOrder.h:153: syntax error before "uint32_t" /usr/include/libkern/ppc/OSByteOrder.h:163: syntax error before "uint64_t" In file included from /usr/include/mach/ndr.h:93, from /usr/include/mach/clock_priv.h:7, from /usr/include/mach/mach_interface.h:37, from /usr/include/mach/mach.h:62, from /usr/include/sys/event.h:154, from /usr/include/sys/select.h:71, from /sw/include/python2.2/pyport.h:119, from /sw/include/python2.2/Python.h:62, from ../layer0/os_python.h:23, from ../layer5/main.h:19, from Block.c:20: /usr/include/libkern/OSByteOrder.h:49: syntax error before "int32_t" /usr/include/libkern/OSByteOrder.h:105: syntax error before "uint16_t" /usr/include/libkern/OSByteOrder.h:115: syntax error before "uint32_t" /usr/include/libkern/OSByteOrder.h:125: syntax error before "uint64_t" /usr/include/libkern/OSByteOrder.h:137: syntax error before "void" /usr/include/libkern/OSByteOrder.h:148: syntax error before "void" /usr/include/libkern/OSByteOrder.h:159: syntax error before "void" /usr/include/libkern/OSByteOrder.h:172: syntax error before "uint16_t" /usr/include/libkern/OSByteOrder.h:182: syntax error before "uint32_t" /usr/include/libkern/OSByteOrder.h:192: syntax error before "uint64_t" /usr/include/libkern/OSByteOrder.h:204: syntax error before "void" /usr/include/libkern/OSByteOrder.h:215: syntax error before "void" /usr/include/libkern/OSByteOrder.h:226: syntax error before "void" /usr/include/libkern/OSByteOrder.h:245: syntax error before "uint16_t" /usr/include/libkern/OSByteOrder.h:254: syntax error before "uint32_t" /usr/include/libkern/OSByteOrder.h:263: syntax error before "uint64_t" /usr/include/libkern/OSByteOrder.h:292: syntax error before "uint16_t" /usr/include/libkern/OSByteOrder.h:301: syntax error before "uint32_t" /usr/include/libkern/OSByteOrder.h:310: syntax error before "uint64_t" make[1]: *** [Block.o] Error 1 make: *** [.update] Error 2 ### execution of make failed, exit code 2 Failed: compiling pymol-0.90-2 failed ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Scott Classen, Ph.D. ACS Postdoctoral Fellow Department of Molecular & Cell Biology University of California, Berkeley 237 Hildebrand Hall #3206 Berkeley, CA 94720-3206 LAB 510.643.9491 FAX 510.643.9290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |