[PyMOL] Visualisation clashed structures

[Magnus, M. <mm...@fa...>]

Hey,

I’m working a new method for RNA 3D structure prediction. And yeah, I see that the structure is a mess, but I want to be able to load the structure into PyMOL. I can do that with Chimera, but PyMOL apparently is trying to do something, and this something takes forever to load the model. I love PyMOL and have lots of my own plugins to work with RNA 3D structures, I would love to be able to use PyMOL for analysis what’s going on in here.

Any ideas, hints, why it takes so long to load it. Is it that PyMOL is calculcate bonds between all the atoms and it’s getting overwhelmed but this mess?

Any hints are welocome,

Magnus

Elena Rivas lab, MCB, Harvard
mm...@fa...<mailto:mm...@fa...>
https://mmagnus.github.io/

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