Re: [PyMOL] [pymol] Assembly

[Norbert S. <st...@bb...>]

Dear Matthias,

use:

set assembly, 1
set all_states, 1
fetch 7epp

GUI "generate symmetry mates" does not work as the unit cell is defined as:
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1
resulting in symmetry mates shifted by 1.0 Ang. in x y z.

We need a "generate biological assembly" command.

Best,

Norbert

Am 22.09.2024 um 12:02 schrieb Matthias Mayer:
> To whom it may concern,
>
> I wanted to load a cryoEM structure of a virus-like particle 
> (7epp.pdb1) into pymol 2.5.0. But instead of showing all the subunits, 
> when I open the file, it makes a movie out of it with individual 
> framesIs there a way to prevent this and just show the entire assembly?
>
> Also when I used the single file 7epp.cif and used the command 
> generate symmetry mates, it makes weird things, overlaying all the 
> structures with only a small translational offset and not rotation.
>
> Thanks for any suggestions.
>
> Best regards
>
> Matthias
>