From: Tomas M. <tom...@gm...> - 2023-12-26 12:40:57
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Dear All, I have multiple aligned PDB files loaded in PyMOL, each representing different conformations of the same protein. I'm interested in creating a graph displaying RMSD per residue, similar to those shown at https://www.ks.uiuc.edu/Training/Tutorials/science/aars/aars_html.bak/node22.html or https://www.compchems.com/how-to-compute-the-rmsf-using-gromacs/#the-gmx-rmsf-command. I'm wondering if anyone has a script available that can calculate RMSD per residue and write the data to a text file for graph generation. If so, would they be able to share it with everyone? Thank you for your help. Best wishes, Tomas |