|
From: Mark W. <mw...@di...> - 2002-10-24 19:25:07
|
Hello,
Background
I want to create a surface colored by electrostatic potential in PyMOL.
I can simulate this by coloring atoms by a formal charge which is
either 1, 0 or -1, ...
color white
color blue, (fc; > 0.5)
color red, (fc; < -0.5)
show surface
Of course this does not look like a surface colored by Poisson-Boltzmann
calculated potentials
Questions
1. Can I color atoms by partial_charge? (this did not seem to work for
me)
2. Is there a better way using only PyMOL to approximate P-B calculated
potentials?
Thanks,
Mark
|