Re: [PyMOL] Need help with selections

[Ezequiel H P. <zac@SLAC.Stanford.EDU>]

select ligands, (byres gmp expand 5 and psd)

selects whole residues from molecule psd within 5 A from gmp


aar...@gs... wrote:
> Hello,
> 
> I am somewhat new to PYMOL and was trying to create a selection of atoms.
> What I need to do is select all atoms of a protein that are within 5
> angstroms of an inhibitor (the protein and inhibitor are separate
> molecules).  I cannot figure out how to do this from the examples in the
> manual. I will want to use this selection to make a surface of the
> selection afterward.
> 
> Thanks,
> 
> Aaron
> 
> 
> Aaron B. Miller
> Computational Chemist
> GlaxoSmithKline R & D
> Five Moore Drive, North M1407
> RTP, NC 27709-3398
> (919) 483-6069  Fax (919) 315-0430
> Aar...@gs...
> 
> 
> 
> 
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-- 
--
  Ezequiel Panepucci, Ph.D. - Laboratory of Prof. Axel Brunger
  HHMI - Stanford University
  Phone: 650-736-1714
  Cell:  650-714-9414