Re: [PyMOL] Disulfide Bonds

[Kaushik R. <kx...@ps...>]

A similar question: Does PyMOL have a PDB file parser that can read 
disulphide linkages from the file and connect the atoms or one has to 
explicitly issue bond commands. Also, can PyMOL display hydrogen bonds 
without the user having to write out a list?

thanks,

Kaushik Raha.
Penn State University.

On Friday, September 20, 2002, at 04:07 PM, DeLano, Warren wrote:

> Alex,
>
> 	If the sulfurs are within disulfide bonding distance, PyMOL should 
> connect them by default.  If this is not happening, please send me the 
> PDB file so I can take a look-see.
>
>       Otherwise, you can use the "bond" command to attach them:
>
> bond 24/sg,26/sg
> bond 56/sb,99/sg
>
> unpick
>
> (unpick will hide the bond baton which gets displayed)
>
> Cheers,
> Warren
>
> --
> mailto:wa...@su...
> Warren L. DeLano, Ph.D.
>
>> -----Original Message-----
>> From: Alex Morla [mailto:al...@ui...]
>> Sent: Friday, September 20, 2002 8:48 AM
>> To: pym...@li...
>> Subject: [PyMOL] Disulfide Bonds
>>
>>
>> Sorry if this is a novice question, but how do I display the
>> disulfide bonds
>> in my models?
>>
>> Thanks, and keep up the great work!!
>>
>> Alex Morla
>> Univ. of Illinois, Rockford.
>>
>>
>>
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