RE: [PyMOL] Problem with Seleno-Cysteine

[DeLano, W. <wa...@su...>]

alter eys/,type=3D'ATOM'
sort

The problem is that, by default, PyMOL doesn't create ribbons for =
HETATMs (typically ligands and solvent).  With the above command, you're =
converting selenocysteine residues into regular atoms and sorting them =
into place so that they can be included in the ribbon.

Cheers,
Warren

--
mailto:wa...@su...
Warren L. DeLano, Ph.D.
Informatics Manager
Sunesis Pharmaceuticals, Inc.
341 Oyster Point Blvd.
S. San Francisco, CA 94080
(650)-266-3606  FAX:(650)-266-3501



> -----Original Message-----
> From: jo...@al... [mailto:jo...@al...]
> Sent: Tuesday, August 06, 2002 7:43 AM
> To: pym...@li...
> Subject: [PyMOL] Problem with Seleno-Cysteine
>=20
>=20
> Hi everybody
>=20
> I have the structure of a Molybdo-CODH (CO-Dehydrogenase),=20
> which contains a
> Seleno-Cysteine as Ligand for the active site cluster (see 1QJ2.pdb)
> The residue b/388 is denoted as EYS in the pdb file.
> In the cartoon representation, pymol does not display this=20
> part of the backbone
> (I get a "hole" in the cartoon structure).
> I can display this residue using "show sticks, resi 388", and=20
> I can pick every
> single atom, even the selenium.
> Any idea how I can display the backbone without break?
>=20
> Thanks
> joerg
>=20
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